Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 23514 | 0.67 | 0.647594 |
Target: 5'- uCGCgCCGGgcGCccUGGCCGucGCCCuGGg -3' miRNA: 3'- -GUG-GGCCuuCGuuAUUGGC--UGGGuCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 21277 | 0.67 | 0.658953 |
Target: 5'- gGCCgGGGAGCGGguuucgguGCCGuCCguGGc -3' miRNA: 3'- gUGGgCCUUCGUUau------UGGCuGGguCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 33987 | 0.67 | 0.670286 |
Target: 5'- -cCCCGGAA-----AGCCGGCaCCAGGc -3' miRNA: 3'- guGGGCCUUcguuaUUGGCUG-GGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 30885 | 0.67 | 0.670286 |
Target: 5'- --aCCGGcugauGCGccgcGUAgacGCCGGCCCAGGu -3' miRNA: 3'- gugGGCCuu---CGU----UAU---UGGCUGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 20806 | 0.67 | 0.674809 |
Target: 5'- aCGCCCGGcgcucuGcuguugggucagggcGGCGAUGggcuugGCCuGGCCCAGGu -3' miRNA: 3'- -GUGGGCC------U---------------UCGUUAU------UGG-CUGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 27211 | 0.67 | 0.680453 |
Target: 5'- gGCCuugcgagCGGcGGCGAUAuuuuCCGGCCgCAGGc -3' miRNA: 3'- gUGG-------GCCuUCGUUAUu---GGCUGG-GUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 30888 | 0.67 | 0.681581 |
Target: 5'- gCGCCCuGGAAGaCAAcuauuacAACCGGCUguGGc -3' miRNA: 3'- -GUGGG-CCUUC-GUUa------UUGGCUGGguCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 9660 | 0.67 | 0.63622 |
Target: 5'- gCGgCCGGuGGCuucgccgAGCCGGCCgAGGc -3' miRNA: 3'- -GUgGGCCuUCGuua----UUGGCUGGgUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 17909 | 0.67 | 0.658953 |
Target: 5'- gCGCCUGGcAGGCGuuugugGACCGcuccacgucgcCCCAGGg -3' miRNA: 3'- -GUGGGCC-UUCGUua----UUGGCu----------GGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 26910 | 0.67 | 0.681581 |
Target: 5'- aGCgCgGGAAGCAAUucACCGAUgcccuUCAGGa -3' miRNA: 3'- gUG-GgCCUUCGUUAu-UGGCUG-----GGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 22521 | 0.67 | 0.670286 |
Target: 5'- aCACCCaGGAauaacccaccccAGCAGaggGACCGcCCCuGGc -3' miRNA: 3'- -GUGGG-CCU------------UCGUUa--UUGGCuGGGuCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 16724 | 0.67 | 0.670286 |
Target: 5'- gCGCCCuGGuccucGCAucgcugcGCUGGCCCAGGu -3' miRNA: 3'- -GUGGG-CCuu---CGUuau----UGGCUGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 17843 | 0.68 | 0.602115 |
Target: 5'- gCACCCuGGGAGCGccuGCCG-CCCucGGc -3' miRNA: 3'- -GUGGG-CCUUCGUuauUGGCuGGGu-CC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 25413 | 0.68 | 0.590788 |
Target: 5'- gGCCCGGAucaaGGCGAUGgucGCCGccuCCCugcaacagcGGGa -3' miRNA: 3'- gUGGGCCU----UCGUUAU---UGGCu--GGG---------UCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 28157 | 0.68 | 0.629392 |
Target: 5'- aACCCGGaAAGCAGagacgccccUAGCUGGCgggucgccauccuggCCAGGu -3' miRNA: 3'- gUGGGCC-UUCGUU---------AUUGGCUG---------------GGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 28287 | 0.68 | 0.602115 |
Target: 5'- gGCCUGGAuAGCGGcggcGCCG-CUCAGGa -3' miRNA: 3'- gUGGGCCU-UCGUUau--UGGCuGGGUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 20451 | 0.68 | 0.602115 |
Target: 5'- uCGCCUGGgcGUccagGGCCGGCUuCAGGg -3' miRNA: 3'- -GUGGGCCuuCGuua-UUGGCUGG-GUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 27155 | 0.68 | 0.579499 |
Target: 5'- cCGCCUGGAucgcGGCAAUGcuCCGGUCCAGc -3' miRNA: 3'- -GUGGGCCU----UCGUUAUu-GGCUGGGUCc -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 26776 | 0.68 | 0.590788 |
Target: 5'- aCGCCUGG-AGCA---ACUGACCaAGGg -3' miRNA: 3'- -GUGGGCCuUCGUuauUGGCUGGgUCC- -5' |
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23055 | 3' | -53.5 | NC_005178.1 | + | 7965 | 0.68 | 0.621428 |
Target: 5'- aACaaGGAAGCGAUccucaagaacccgaGGCCG-UCCAGGg -3' miRNA: 3'- gUGggCCUUCGUUA--------------UUGGCuGGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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