miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 34638 0.69 0.513038
Target:  5'- uCGCCCGGccAGCuccccGGUGGCaCG-CCCAGGa -3'
miRNA:   3'- -GUGGGCCu-UCG-----UUAUUG-GCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 8886 0.69 0.513038
Target:  5'- aCACCCGGcacgcgccGGGCGAcuuucuuGCCGACCUGGu -3'
miRNA:   3'- -GUGGGCC--------UUCGUUau-----UGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 16787 0.69 0.52283
Target:  5'- aGCgCUGGAccaggugcuggccAGCcu--GCCGGCCCAGGa -3'
miRNA:   3'- gUG-GGCCU-------------UCGuuauUGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 17703 0.69 0.534894
Target:  5'- gAUUCGGGAGCAGaccuUGACC-ACCCuGGa -3'
miRNA:   3'- gUGGGCCUUCGUU----AUUGGcUGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 16797 0.69 0.510872
Target:  5'- uCACCUGGGccagcgcAGCGAUGcgaggaccagggcGCCGGCUCAGu -3'
miRNA:   3'- -GUGGGCCU-------UCGUUAU-------------UGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 28157 0.68 0.629392
Target:  5'- aACCCGGaAAGCAGagacgccccUAGCUGGCgggucgccauccuggCCAGGu -3'
miRNA:   3'- gUGGGCC-UUCGUU---------AUUGGCUG---------------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 13152 0.68 0.568256
Target:  5'- uCAUCCGuGAGCGGUucCCGcagcacGCCCAGGc -3'
miRNA:   3'- -GUGGGCcUUCGUUAuuGGC------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 8904 0.68 0.579499
Target:  5'- gACCCuGGGccAGCAG-GAUCGGCCCGGc -3'
miRNA:   3'- gUGGG-CCU--UCGUUaUUGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 1453 0.68 0.579499
Target:  5'- aUACCUGGugaguGCAAcuacGCCG-CCCAGGu -3'
miRNA:   3'- -GUGGGCCuu---CGUUau--UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 8977 0.68 0.590788
Target:  5'- uCACCCGGAcagagcuacGGCGccguagacgucgAUAGCCGACuCCGc- -3'
miRNA:   3'- -GUGGGCCU---------UCGU------------UAUUGGCUG-GGUcc -5'
23055 3' -53.5 NC_005178.1 + 25413 0.68 0.590788
Target:  5'- gGCCCGGAucaaGGCGAUGgucGCCGccuCCCugcaacagcGGGa -3'
miRNA:   3'- gUGGGCCU----UCGUUAU---UGGCu--GGG---------UCC- -5'
23055 3' -53.5 NC_005178.1 + 26776 0.68 0.590788
Target:  5'- aCGCCUGG-AGCA---ACUGACCaAGGg -3'
miRNA:   3'- -GUGGGCCuUCGUuauUGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 17843 0.68 0.602115
Target:  5'- gCACCCuGGGAGCGccuGCCG-CCCucGGc -3'
miRNA:   3'- -GUGGG-CCUUCGUuauUGGCuGGGu-CC- -5'
23055 3' -53.5 NC_005178.1 + 27155 0.68 0.579499
Target:  5'- cCGCCUGGAucgcGGCAAUGcuCCGGUCCAGc -3'
miRNA:   3'- -GUGGGCCU----UCGUUAUu-GGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 7965 0.68 0.621428
Target:  5'- aACaaGGAAGCGAUccucaagaacccgaGGCCG-UCCAGGg -3'
miRNA:   3'- gUGggCCUUCGUUA--------------UUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 28287 0.68 0.602115
Target:  5'- gGCCUGGAuAGCGGcggcGCCG-CUCAGGa -3'
miRNA:   3'- gUGGGCCU-UCGUUau--UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20451 0.68 0.602115
Target:  5'- uCGCCUGGgcGUccagGGCCGGCUuCAGGg -3'
miRNA:   3'- -GUGGGCCuuCGuua-UUGGCUGG-GUCC- -5'
23055 3' -53.5 NC_005178.1 + 9660 0.67 0.63622
Target:  5'- gCGgCCGGuGGCuucgccgAGCCGGCCgAGGc -3'
miRNA:   3'- -GUgGGCCuUCGuua----UUGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 30888 0.67 0.681581
Target:  5'- gCGCCCuGGAAGaCAAcuauuacAACCGGCUguGGc -3'
miRNA:   3'- -GUGGG-CCUUC-GUUa------UUGGCUGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 26910 0.67 0.681581
Target:  5'- aGCgCgGGAAGCAAUucACCGAUgcccuUCAGGa -3'
miRNA:   3'- gUG-GgCCUUCGUUAu-UGGCUG-----GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.