miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 17843 0.68 0.602115
Target:  5'- gCACCCuGGGAGCGccuGCCG-CCCucGGc -3'
miRNA:   3'- -GUGGG-CCUUCGUuauUGGCuGGGu-CC- -5'
23055 3' -53.5 NC_005178.1 + 22066 0.73 0.329543
Target:  5'- aGCCCaGGAAGCA---GCCGGaauucguuuCCCAGGu -3'
miRNA:   3'- gUGGG-CCUUCGUuauUGGCU---------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 36098 0.72 0.355107
Target:  5'- cUAUCUGGGAGUAcauGCCG-CCCAGGu -3'
miRNA:   3'- -GUGGGCCUUCGUuauUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 3981 0.72 0.355107
Target:  5'- gGCCCGGccGCuuu--CCGAcCCCAGGu -3'
miRNA:   3'- gUGGGCCuuCGuuauuGGCU-GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23465 0.72 0.37291
Target:  5'- gCGCCCGGc-GCGA-AGCCGGCCCGc- -3'
miRNA:   3'- -GUGGGCCuuCGUUaUUGGCUGGGUcc -5'
23055 3' -53.5 NC_005178.1 + 35604 0.72 0.37291
Target:  5'- gGCCCGGAAGCug-GGgCGACggugacgcuCCAGGu -3'
miRNA:   3'- gUGGGCCUUCGuuaUUgGCUG---------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33907 0.72 0.390376
Target:  5'- gCGCCUGGcGGCGAUGcucggcggccgguGCCGGCuuuCCGGGg -3'
miRNA:   3'- -GUGGGCCuUCGUUAU-------------UGGCUG---GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 28122 0.71 0.410292
Target:  5'- gGCCUGGGcgguGGCAccgAUGGCgGcGCCCAGGg -3'
miRNA:   3'- gUGGGCCU----UCGU---UAUUGgC-UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 30790 0.7 0.470502
Target:  5'- cCGCCUGGcAGCGGUcgcGGCCucGACCUGGGc -3'
miRNA:   3'- -GUGGGCCuUCGUUA---UUGG--CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16787 0.69 0.52283
Target:  5'- aGCgCUGGAccaggugcuggccAGCcu--GCCGGCCCAGGa -3'
miRNA:   3'- gUG-GGCCU-------------UCGuuauUGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 17703 0.69 0.534894
Target:  5'- gAUUCGGGAGCAGaccuUGACC-ACCCuGGa -3'
miRNA:   3'- gUGGGCCUUCGUU----AUUGGcUGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 13152 0.68 0.568256
Target:  5'- uCAUCCGuGAGCGGUucCCGcagcacGCCCAGGc -3'
miRNA:   3'- -GUGGGCcUUCGUUAuuGGC------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 8904 0.68 0.579499
Target:  5'- gACCCuGGGccAGCAG-GAUCGGCCCGGc -3'
miRNA:   3'- gUGGG-CCU--UCGUUaUUGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 1453 0.68 0.579499
Target:  5'- aUACCUGGugaguGCAAcuacGCCG-CCCAGGu -3'
miRNA:   3'- -GUGGGCCuu---CGUUau--UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 8977 0.68 0.590788
Target:  5'- uCACCCGGAcagagcuacGGCGccguagacgucgAUAGCCGACuCCGc- -3'
miRNA:   3'- -GUGGGCCU---------UCGU------------UAUUGGCUG-GGUcc -5'
23055 3' -53.5 NC_005178.1 + 25413 0.68 0.590788
Target:  5'- gGCCCGGAucaaGGCGAUGgucGCCGccuCCCugcaacagcGGGa -3'
miRNA:   3'- gUGGGCCU----UCGUUAU---UGGCu--GGG---------UCC- -5'
23055 3' -53.5 NC_005178.1 + 6696 0.7 0.502247
Target:  5'- gCGCCUGGAccgGGCGGccucacuGCUGAgCCAGGa -3'
miRNA:   3'- -GUGGGCCU---UCGUUau-----UGGCUgGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 28157 0.68 0.629392
Target:  5'- aACCCGGaAAGCAGagacgccccUAGCUGGCgggucgccauccuggCCAGGu -3'
miRNA:   3'- gUGGGCC-UUCGUU---------AUUGGCUG---------------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 21690 0.67 0.63622
Target:  5'- -gUCCGGGAGCugagccgccgAGUAACCGgccaucuucGCCUGGGg -3'
miRNA:   3'- guGGGCCUUCG----------UUAUUGGC---------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 24977 0.67 0.647594
Target:  5'- uCGCuuGGAcggAGCGA--ACgGACCCAGu -3'
miRNA:   3'- -GUGggCCU---UCGUUauUGgCUGGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.