miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 22225 0.66 0.726132
Target:  5'- gCugCCaGAAGCcGUAACCGGCagcagcgCGGGc -3'
miRNA:   3'- -GugGGcCUUCGuUAUUGGCUGg------GUCC- -5'
23055 3' -53.5 NC_005178.1 + 23124 0.66 0.726132
Target:  5'- -uCCCGGAGGaaau-ACCG-CCCAGc -3'
miRNA:   3'- guGGGCCUUCguuauUGGCuGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 30956 0.66 0.715113
Target:  5'- aCAgCCGGuuGUAAUAGuuGucuUCCAGGg -3'
miRNA:   3'- -GUgGGCCuuCGUUAUUggCu--GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 27211 0.67 0.680453
Target:  5'- gGCCuugcgagCGGcGGCGAUAuuuuCCGGCCgCAGGc -3'
miRNA:   3'- gUGG-------GCCuUCGUUAUu---GGCUGG-GUCC- -5'
23055 3' -53.5 NC_005178.1 + 33794 0.67 0.674809
Target:  5'- uCGCCCGGAuuGCAcaAACUucaucgacuuucuuGCCCAGGg -3'
miRNA:   3'- -GUGGGCCUu-CGUuaUUGGc-------------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20806 0.67 0.674809
Target:  5'- aCGCCCGGcgcucuGcuguugggucagggcGGCGAUGggcuugGCCuGGCCCAGGu -3'
miRNA:   3'- -GUGGGCC------U---------------UCGUUAU------UGG-CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 30885 0.67 0.670286
Target:  5'- --aCCGGcugauGCGccgcGUAgacGCCGGCCCAGGu -3'
miRNA:   3'- gugGGCCuu---CGU----UAU---UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33987 0.67 0.670286
Target:  5'- -cCCCGGAA-----AGCCGGCaCCAGGc -3'
miRNA:   3'- guGGGCCUUcguuaUUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 21277 0.67 0.658953
Target:  5'- gGCCgGGGAGCGGguuucgguGCCGuCCguGGc -3'
miRNA:   3'- gUGGgCCUUCGUUau------UGGCuGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 23514 0.67 0.647594
Target:  5'- uCGCgCCGGgcGCccUGGCCGucGCCCuGGg -3'
miRNA:   3'- -GUG-GGCCuuCGuuAUUGGC--UGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 24977 0.67 0.647594
Target:  5'- uCGCuuGGAcggAGCGA--ACgGACCCAGu -3'
miRNA:   3'- -GUGggCCU---UCGUUauUGgCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 28157 0.68 0.629392
Target:  5'- aACCCGGaAAGCAGagacgccccUAGCUGGCgggucgccauccuggCCAGGu -3'
miRNA:   3'- gUGGGCC-UUCGUU---------AUUGGCUG---------------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 10296 0.66 0.737051
Target:  5'- aGCUCGGcGGCAcguccuggcggAUAGCCGAgggCCGGGc -3'
miRNA:   3'- gUGGGCCuUCGU-----------UAUUGGCUg--GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 5974 0.66 0.737051
Target:  5'- aACCCGGAgucguuccggGGC----GCUGcCCCAGGc -3'
miRNA:   3'- gUGGGCCU----------UCGuuauUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23175 0.66 0.737051
Target:  5'- gCACCUGGuGAGCAcu-GCCGAgCCGu- -3'
miRNA:   3'- -GUGGGCC-UUCGUuauUGGCUgGGUcc -5'
23055 3' -53.5 NC_005178.1 + 30790 0.7 0.470502
Target:  5'- cCGCCUGGcAGCGGUcgcGGCCucGACCUGGGc -3'
miRNA:   3'- -GUGGGCCuUCGUUA---UUGG--CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 25413 0.68 0.590788
Target:  5'- gGCCCGGAucaaGGCGAUGgucGCCGccuCCCugcaacagcGGGa -3'
miRNA:   3'- gUGGGCCU----UCGUUAU---UGGCu--GGG---------UCC- -5'
23055 3' -53.5 NC_005178.1 + 8977 0.68 0.590788
Target:  5'- uCACCCGGAcagagcuacGGCGccguagacgucgAUAGCCGACuCCGc- -3'
miRNA:   3'- -GUGGGCCU---------UCGU------------UAUUGGCUG-GGUcc -5'
23055 3' -53.5 NC_005178.1 + 1453 0.68 0.579499
Target:  5'- aUACCUGGugaguGCAAcuacGCCG-CCCAGGu -3'
miRNA:   3'- -GUGGGCCuu---CGUUau--UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 8904 0.68 0.579499
Target:  5'- gACCCuGGGccAGCAG-GAUCGGCCCGGc -3'
miRNA:   3'- gUGGG-CCU--UCGUUaUUGGCUGGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.