miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 30720 1.09 0.00096
Target:  5'- uCACCCGGAAGCAAUAACCGACCCAGGc -3'
miRNA:   3'- -GUGGGCCUUCGUUAUUGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 21690 0.67 0.63622
Target:  5'- -gUCCGGGAGCugagccgccgAGUAACCGgccaucuucGCCUGGGg -3'
miRNA:   3'- guGGGCCUUCG----------UUAUUGGC---------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23514 0.67 0.647594
Target:  5'- uCGCgCCGGgcGCccUGGCCGucGCCCuGGg -3'
miRNA:   3'- -GUG-GGCCuuCGuuAUUGGC--UGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 21075 0.66 0.737051
Target:  5'- aGgCCGGuGGCGGUGcuGCCG-CCCAcGGc -3'
miRNA:   3'- gUgGGCCuUCGUUAU--UGGCuGGGU-CC- -5'
23055 3' -53.5 NC_005178.1 + 4873 0.71 0.423915
Target:  5'- gGCCUGGAcguaguaggcgcggcGGCGAUuGgCGAUCCAGGc -3'
miRNA:   3'- gUGGGCCU---------------UCGUUAuUgGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33557 0.71 0.449916
Target:  5'- cCugCCGGuGGCAGUAGCCcugucgaguGGUCCAGGu -3'
miRNA:   3'- -GugGGCCuUCGUUAUUGG---------CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 5228 0.7 0.460148
Target:  5'- cCACuCCGG-GGCuguaGACCGGCgCCAGGu -3'
miRNA:   3'- -GUG-GGCCuUCGuua-UUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 4400 0.7 0.470502
Target:  5'- uGCUCGGggGUGAUcguGCCGAggCCGGGg -3'
miRNA:   3'- gUGGGCCuuCGUUAu--UGGCUg-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 34638 0.69 0.513038
Target:  5'- uCGCCCGGccAGCuccccGGUGGCaCG-CCCAGGa -3'
miRNA:   3'- -GUGGGCCu-UCG-----UUAUUG-GCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 28157 0.68 0.629392
Target:  5'- aACCCGGaAAGCAGagacgccccUAGCUGGCgggucgccauccuggCCAGGu -3'
miRNA:   3'- gUGGGCC-UUCGUU---------AUUGGCUG---------------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 27155 0.68 0.579499
Target:  5'- cCGCCUGGAucgcGGCAAUGcuCCGGUCCAGc -3'
miRNA:   3'- -GUGGGCCU----UCGUUAUu-GGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 8886 0.69 0.513038
Target:  5'- aCACCCGGcacgcgccGGGCGAcuuucuuGCCGACCUGGu -3'
miRNA:   3'- -GUGGGCC--------UUCGUUau-----UGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 29013 0.78 0.150436
Target:  5'- uCACCUGGcgcacGGCGAUGGCCGugCCGGa -3'
miRNA:   3'- -GUGGGCCu----UCGUUAUUGGCugGGUCc -5'
23055 3' -53.5 NC_005178.1 + 20451 0.68 0.602115
Target:  5'- uCGCCUGGgcGUccagGGCCGGCUuCAGGg -3'
miRNA:   3'- -GUGGGCCuuCGuua-UUGGCUGG-GUCC- -5'
23055 3' -53.5 NC_005178.1 + 8986 0.73 0.346433
Target:  5'- aCACCCccagcgcacGGAAGCcgggccGAUccuGCUGGCCCAGGg -3'
miRNA:   3'- -GUGGG---------CCUUCG------UUAu--UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16797 0.69 0.510872
Target:  5'- uCACCUGGGccagcgcAGCGAUGcgaggaccagggcGCCGGCUCAGu -3'
miRNA:   3'- -GUGGGCCU-------UCGUUAU-------------UGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 28287 0.68 0.602115
Target:  5'- gGCCUGGAuAGCGGcggcGCCG-CUCAGGa -3'
miRNA:   3'- gUGGGCCU-UCGUUau--UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 24977 0.67 0.647594
Target:  5'- uCGCuuGGAcggAGCGA--ACgGACCCAGu -3'
miRNA:   3'- -GUGggCCU---UCGUUauUGgCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 7512 0.72 0.372005
Target:  5'- uGCCCuGGAAGCGggugauguaacggGUGcuGCCGGCCgAGGc -3'
miRNA:   3'- gUGGG-CCUUCGU-------------UAU--UGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 33104 0.71 0.449916
Target:  5'- cCugCCGGAAuGCccucgguGCCG-CCCAGGa -3'
miRNA:   3'- -GugGGCCUU-CGuuau---UGGCuGGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.