miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 13152 0.68 0.568256
Target:  5'- uCAUCCGuGAGCGGUucCCGcagcacGCCCAGGc -3'
miRNA:   3'- -GUGGGCcUUCGUUAuuGGC------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 17703 0.69 0.534894
Target:  5'- gAUUCGGGAGCAGaccuUGACC-ACCCuGGa -3'
miRNA:   3'- gUGGGCCUUCGUU----AUUGGcUGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 16787 0.69 0.52283
Target:  5'- aGCgCUGGAccaggugcuggccAGCcu--GCCGGCCCAGGa -3'
miRNA:   3'- gUG-GGCCU-------------UCGuuauUGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 6696 0.7 0.502247
Target:  5'- gCGCCUGGAccgGGCGGccucacuGCUGAgCCAGGa -3'
miRNA:   3'- -GUGGGCCU---UCGUUau-----UGGCUgGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 26776 0.68 0.590788
Target:  5'- aCGCCUGG-AGCA---ACUGACCaAGGg -3'
miRNA:   3'- -GUGGGCCuUCGUuauUGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 28122 0.71 0.410292
Target:  5'- gGCCUGGGcgguGGCAccgAUGGCgGcGCCCAGGg -3'
miRNA:   3'- gUGGGCCU----UCGU---UAUUGgC-UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33907 0.72 0.390376
Target:  5'- gCGCCUGGcGGCGAUGcucggcggccgguGCCGGCuuuCCGGGg -3'
miRNA:   3'- -GUGGGCCuUCGUUAU-------------UGGCUG---GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 35604 0.72 0.37291
Target:  5'- gGCCCGGAAGCug-GGgCGACggugacgcuCCAGGu -3'
miRNA:   3'- gUGGGCCUUCGuuaUUgGCUG---------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23465 0.72 0.37291
Target:  5'- gCGCCCGGc-GCGA-AGCCGGCCCGc- -3'
miRNA:   3'- -GUGGGCCuuCGUUaUUGGCUGGGUcc -5'
23055 3' -53.5 NC_005178.1 + 3981 0.72 0.355107
Target:  5'- gGCCCGGccGCuuu--CCGAcCCCAGGu -3'
miRNA:   3'- gUGGGCCuuCGuuauuGGCU-GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 36098 0.72 0.355107
Target:  5'- cUAUCUGGGAGUAcauGCCG-CCCAGGu -3'
miRNA:   3'- -GUGGGCCUUCGUuauUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16190 0.73 0.337911
Target:  5'- cCugCUGcGAGCGGUGACCGGCCUcGGc -3'
miRNA:   3'- -GugGGCcUUCGUUAUUGGCUGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 30888 0.67 0.681581
Target:  5'- gCGCCCuGGAAGaCAAcuauuacAACCGGCUguGGc -3'
miRNA:   3'- -GUGGG-CCUUC-GUUa------UUGGCUGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 23337 0.66 0.726132
Target:  5'- cUACCUGGgcGaCGA-GAUCGGCaCCGGGg -3'
miRNA:   3'- -GUGGGCCuuC-GUUaUUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20382 0.66 0.726132
Target:  5'- cCGCCCuGAAGCc--GGCCcuggacGCCCAGGc -3'
miRNA:   3'- -GUGGGcCUUCGuuaUUGGc-----UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20870 0.66 0.726132
Target:  5'- gGCCaguaaGGAGGCGcuAUGACCG-CCCuGa -3'
miRNA:   3'- gUGGg----CCUUCGU--UAUUGGCuGGGuCc -5'
23055 3' -53.5 NC_005178.1 + 5260 0.66 0.715113
Target:  5'- aACCUGG-AGCAGUuGGCCGAggccgccaccgUUCAGGg -3'
miRNA:   3'- gUGGGCCuUCGUUA-UUGGCU-----------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 32628 0.66 0.715113
Target:  5'- gACCCGGucgccGAGCGGUGccgUCGACCUGGu -3'
miRNA:   3'- gUGGGCC-----UUCGUUAUu--GGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 12413 0.66 0.714006
Target:  5'- -cCCCGGuGGCGGUGACUGAugacaacCCCGa- -3'
miRNA:   3'- guGGGCCuUCGUUAUUGGCU-------GGGUcc -5'
23055 3' -53.5 NC_005178.1 + 25750 0.66 0.704006
Target:  5'- gCugCCaGggGuCGAggGAUCGACCCGGa -3'
miRNA:   3'- -GugGGcCuuC-GUUa-UUGGCUGGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.