miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 23175 0.66 0.737051
Target:  5'- gCACCUGGuGAGCAcu-GCCGAgCCGu- -3'
miRNA:   3'- -GUGGGCC-UUCGUuauUGGCUgGGUcc -5'
23055 3' -53.5 NC_005178.1 + 24838 0.66 0.737051
Target:  5'- gCACCUGGAggaacgccucGGCAAUGGCCuugagGGCCgCGuGGu -3'
miRNA:   3'- -GUGGGCCU----------UCGUUAUUGG-----CUGG-GU-CC- -5'
23055 3' -53.5 NC_005178.1 + 21075 0.66 0.737051
Target:  5'- aGgCCGGuGGCGGUGcuGCCG-CCCAcGGc -3'
miRNA:   3'- gUgGGCCuUCGUUAU--UGGCuGGGU-CC- -5'
23055 3' -53.5 NC_005178.1 + 31998 0.66 0.737051
Target:  5'- cCGCUCGGcucGGCccauGCCGAUCCAGc -3'
miRNA:   3'- -GUGGGCCu--UCGuuauUGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 5974 0.66 0.737051
Target:  5'- aACCCGGAgucguuccggGGC----GCUGcCCCAGGc -3'
miRNA:   3'- gUGGGCCU----------UCGuuauUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 10296 0.66 0.737051
Target:  5'- aGCUCGGcGGCAcguccuggcggAUAGCCGAgggCCGGGc -3'
miRNA:   3'- gUGGGCCuUCGU-----------UAUUGGCUg--GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 20382 0.66 0.726132
Target:  5'- cCGCCCuGAAGCc--GGCCcuggacGCCCAGGc -3'
miRNA:   3'- -GUGGGcCUUCGuuaUUGGc-----UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23337 0.66 0.726132
Target:  5'- cUACCUGGgcGaCGA-GAUCGGCaCCGGGg -3'
miRNA:   3'- -GUGGGCCuuC-GUUaUUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 23124 0.66 0.726132
Target:  5'- -uCCCGGAGGaaau-ACCG-CCCAGc -3'
miRNA:   3'- guGGGCCUUCguuauUGGCuGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 20870 0.66 0.726132
Target:  5'- gGCCaguaaGGAGGCGcuAUGACCG-CCCuGa -3'
miRNA:   3'- gUGGg----CCUUCGU--UAUUGGCuGGGuCc -5'
23055 3' -53.5 NC_005178.1 + 22225 0.66 0.726132
Target:  5'- gCugCCaGAAGCcGUAACCGGCagcagcgCGGGc -3'
miRNA:   3'- -GugGGcCUUCGuUAUUGGCUGg------GUCC- -5'
23055 3' -53.5 NC_005178.1 + 5260 0.66 0.715113
Target:  5'- aACCUGG-AGCAGUuGGCCGAggccgccaccgUUCAGGg -3'
miRNA:   3'- gUGGGCCuUCGUUA-UUGGCU-----------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 32628 0.66 0.715113
Target:  5'- gACCCGGucgccGAGCGGUGccgUCGACCUGGu -3'
miRNA:   3'- gUGGGCC-----UUCGUUAUu--GGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 30956 0.66 0.715113
Target:  5'- aCAgCCGGuuGUAAUAGuuGucuUCCAGGg -3'
miRNA:   3'- -GUgGGCCuuCGUUAUUggCu--GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 12413 0.66 0.714006
Target:  5'- -cCCCGGuGGCGGUGACUGAugacaacCCCGa- -3'
miRNA:   3'- guGGGCCuUCGUUAUUGGCU-------GGGUcc -5'
23055 3' -53.5 NC_005178.1 + 25750 0.66 0.704006
Target:  5'- gCugCCaGggGuCGAggGAUCGACCCGGa -3'
miRNA:   3'- -GugGGcCuuC-GUUa-UUGGCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 31859 0.66 0.689457
Target:  5'- cCACCuUGGAcaacGGCAgcgcgauuccccgcGUGACCGACgucgCCGGGa -3'
miRNA:   3'- -GUGG-GCCU----UCGU--------------UAUUGGCUG----GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 26910 0.67 0.681581
Target:  5'- aGCgCgGGAAGCAAUucACCGAUgcccuUCAGGa -3'
miRNA:   3'- gUG-GgCCUUCGUUAu-UGGCUG-----GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 30888 0.67 0.681581
Target:  5'- gCGCCCuGGAAGaCAAcuauuacAACCGGCUguGGc -3'
miRNA:   3'- -GUGGG-CCUUC-GUUa------UUGGCUGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 27211 0.67 0.680453
Target:  5'- gGCCuugcgagCGGcGGCGAUAuuuuCCGGCCgCAGGc -3'
miRNA:   3'- gUGG-------GCCuUCGUUAUu---GGCUGG-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.