miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23055 3' -53.5 NC_005178.1 + 20806 0.67 0.674809
Target:  5'- aCGCCCGGcgcucuGcuguugggucagggcGGCGAUGggcuugGCCuGGCCCAGGu -3'
miRNA:   3'- -GUGGGCC------U---------------UCGUUAU------UGG-CUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 33794 0.67 0.674809
Target:  5'- uCGCCCGGAuuGCAcaAACUucaucgacuuucuuGCCCAGGg -3'
miRNA:   3'- -GUGGGCCUu-CGUuaUUGGc-------------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 16724 0.67 0.670286
Target:  5'- gCGCCCuGGuccucGCAucgcugcGCUGGCCCAGGu -3'
miRNA:   3'- -GUGGG-CCuu---CGUuau----UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 22521 0.67 0.670286
Target:  5'- aCACCCaGGAauaacccaccccAGCAGaggGACCGcCCCuGGc -3'
miRNA:   3'- -GUGGG-CCU------------UCGUUa--UUGGCuGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 33987 0.67 0.670286
Target:  5'- -cCCCGGAA-----AGCCGGCaCCAGGc -3'
miRNA:   3'- guGGGCCUUcguuaUUGGCUG-GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 30885 0.67 0.670286
Target:  5'- --aCCGGcugauGCGccgcGUAgacGCCGGCCCAGGu -3'
miRNA:   3'- gugGGCCuu---CGU----UAU---UGGCUGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 17909 0.67 0.658953
Target:  5'- gCGCCUGGcAGGCGuuugugGACCGcuccacgucgcCCCAGGg -3'
miRNA:   3'- -GUGGGCC-UUCGUua----UUGGCu----------GGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 21277 0.67 0.658953
Target:  5'- gGCCgGGGAGCGGguuucgguGCCGuCCguGGc -3'
miRNA:   3'- gUGGgCCUUCGUUau------UGGCuGGguCC- -5'
23055 3' -53.5 NC_005178.1 + 23514 0.67 0.647594
Target:  5'- uCGCgCCGGgcGCccUGGCCGucGCCCuGGg -3'
miRNA:   3'- -GUG-GGCCuuCGuuAUUGGC--UGGGuCC- -5'
23055 3' -53.5 NC_005178.1 + 24977 0.67 0.647594
Target:  5'- uCGCuuGGAcggAGCGA--ACgGACCCAGu -3'
miRNA:   3'- -GUGggCCU---UCGUUauUGgCUGGGUCc -5'
23055 3' -53.5 NC_005178.1 + 9660 0.67 0.63622
Target:  5'- gCGgCCGGuGGCuucgccgAGCCGGCCgAGGc -3'
miRNA:   3'- -GUgGGCCuUCGuua----UUGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 21690 0.67 0.63622
Target:  5'- -gUCCGGGAGCugagccgccgAGUAACCGgccaucuucGCCUGGGg -3'
miRNA:   3'- guGGGCCUUCG----------UUAUUGGC---------UGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 28157 0.68 0.629392
Target:  5'- aACCCGGaAAGCAGagacgccccUAGCUGGCgggucgccauccuggCCAGGu -3'
miRNA:   3'- gUGGGCC-UUCGUU---------AUUGGCUG---------------GGUCC- -5'
23055 3' -53.5 NC_005178.1 + 7965 0.68 0.621428
Target:  5'- aACaaGGAAGCGAUccucaagaacccgaGGCCG-UCCAGGg -3'
miRNA:   3'- gUGggCCUUCGUUA--------------UUGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 28287 0.68 0.602115
Target:  5'- gGCCUGGAuAGCGGcggcGCCG-CUCAGGa -3'
miRNA:   3'- gUGGGCCU-UCGUUau--UGGCuGGGUCC- -5'
23055 3' -53.5 NC_005178.1 + 17843 0.68 0.602115
Target:  5'- gCACCCuGGGAGCGccuGCCG-CCCucGGc -3'
miRNA:   3'- -GUGGG-CCUUCGUuauUGGCuGGGu-CC- -5'
23055 3' -53.5 NC_005178.1 + 20451 0.68 0.602115
Target:  5'- uCGCCUGGgcGUccagGGCCGGCUuCAGGg -3'
miRNA:   3'- -GUGGGCCuuCGuua-UUGGCUGG-GUCC- -5'
23055 3' -53.5 NC_005178.1 + 25413 0.68 0.590788
Target:  5'- gGCCCGGAucaaGGCGAUGgucGCCGccuCCCugcaacagcGGGa -3'
miRNA:   3'- gUGGGCCU----UCGUUAU---UGGCu--GGG---------UCC- -5'
23055 3' -53.5 NC_005178.1 + 26776 0.68 0.590788
Target:  5'- aCGCCUGG-AGCA---ACUGACCaAGGg -3'
miRNA:   3'- -GUGGGCCuUCGUuauUGGCUGGgUCC- -5'
23055 3' -53.5 NC_005178.1 + 8977 0.68 0.590788
Target:  5'- uCACCCGGAcagagcuacGGCGccguagacgucgAUAGCCGACuCCGc- -3'
miRNA:   3'- -GUGGGCCU---------UCGU------------UAUUGGCUG-GGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.