Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 4400 | 0.7 | 0.470502 |
Target: 5'- uGCUCGGggGUGAUcguGCCGAggCCGGGg -3' miRNA: 3'- gUGGGCCuuCGUUAu--UGGCUg-GGUCC- -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 5228 | 0.7 | 0.460148 |
Target: 5'- cCACuCCGG-GGCuguaGACCGGCgCCAGGu -3' miRNA: 3'- -GUG-GGCCuUCGuua-UUGGCUG-GGUCC- -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 33104 | 0.71 | 0.449916 |
Target: 5'- cCugCCGGAAuGCccucgguGCCG-CCCAGGa -3' miRNA: 3'- -GugGGCCUU-CGuuau---UGGCuGGGUCC- -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 33557 | 0.71 | 0.449916 |
Target: 5'- cCugCCGGuGGCAGUAGCCcugucgaguGGUCCAGGu -3' miRNA: 3'- -GugGGCCuUCGUUAUUGG---------CUGGGUCC- -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 4873 | 0.71 | 0.423915 |
Target: 5'- gGCCUGGAcguaguaggcgcggcGGCGAUuGgCGAUCCAGGc -3' miRNA: 3'- gUGGGCCU---------------UCGUUAuUgGCUGGGUCC- -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 7512 | 0.72 | 0.372005 |
Target: 5'- uGCCCuGGAAGCGggugauguaacggGUGcuGCCGGCCgAGGc -3' miRNA: 3'- gUGGG-CCUUCGU-------------UAU--UGGCUGGgUCC- -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 8986 | 0.73 | 0.346433 |
Target: 5'- aCACCCccagcgcacGGAAGCcgggccGAUccuGCUGGCCCAGGg -3' miRNA: 3'- -GUGGG---------CCUUCG------UUAu--UGGCUGGGUCC- -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 29013 | 0.78 | 0.150436 |
Target: 5'- uCACCUGGcgcacGGCGAUGGCCGugCCGGa -3' miRNA: 3'- -GUGGGCCu----UCGUUAUUGGCugGGUCc -5' |
|||||||
23055 | 3' | -53.5 | NC_005178.1 | + | 30720 | 1.09 | 0.00096 |
Target: 5'- uCACCCGGAAGCAAUAACCGACCCAGGc -3' miRNA: 3'- -GUGGGCCUUCGUUAUUGGCUGGGUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home