miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23056 3' -61.1 NC_005178.1 + 31471 1.08 0.000166
Target:  5'- gAUCGGCAGCGCCCAAACGCGCGCGCCc -3'
miRNA:   3'- -UAGCCGUCGCGGGUUUGCGCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 27030 0.77 0.051223
Target:  5'- --aGGUAGCGaUCCAGGCGCGCcuucuGCGCCu -3'
miRNA:   3'- uagCCGUCGC-GGGUUUGCGCG-----CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 28277 0.76 0.057522
Target:  5'- -gCGGCGGCGCCgCucagGAGCGUGC-CGCCa -3'
miRNA:   3'- uaGCCGUCGCGG-G----UUUGCGCGcGCGG- -5'
23056 3' -61.1 NC_005178.1 + 30584 0.75 0.070395
Target:  5'- gGUCGGCAGCGacaCCuGGCGCGUGUaCCc -3'
miRNA:   3'- -UAGCCGUCGCg--GGuUUGCGCGCGcGG- -5'
23056 3' -61.1 NC_005178.1 + 8815 0.74 0.081242
Target:  5'- gGUCGGCaagaaAGuCGCCCG---GCGCGUGCCg -3'
miRNA:   3'- -UAGCCG-----UC-GCGGGUuugCGCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 28141 0.74 0.081242
Target:  5'- -aUGGCGGCGCCCAGGgGCugacgGUcgGCGCCu -3'
miRNA:   3'- uaGCCGUCGCGGGUUUgCG-----CG--CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 32339 0.74 0.086014
Target:  5'- -gUGGCGGCGCUacaGAGCGCcaugaaacagauGCGCGCUa -3'
miRNA:   3'- uaGCCGUCGCGGg--UUUGCG------------CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 11205 0.72 0.110974
Target:  5'- --gGGCGGCGgCCAgGGCGCcCGCGCUg -3'
miRNA:   3'- uagCCGUCGCgGGU-UUGCGcGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 29205 0.72 0.110974
Target:  5'- -aCaGCAGCGCCUGAACcCGCGgGCUg -3'
miRNA:   3'- uaGcCGUCGCGGGUUUGcGCGCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 5878 0.72 0.117378
Target:  5'- cUCGGC--CGCCCAucguccAGCGCGagaCGCGCCg -3'
miRNA:   3'- uAGCCGucGCGGGU------UUGCGC---GCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 29046 0.72 0.117378
Target:  5'- uAUCGGUGcCGCCCAGGCcagGgGCGCGCa -3'
miRNA:   3'- -UAGCCGUcGCGGGUUUG---CgCGCGCGg -5'
23056 3' -61.1 NC_005178.1 + 10409 0.72 0.120707
Target:  5'- cUCGGcCAGCGCagCCcGGCGCGCuucgccccuccGCGCCc -3'
miRNA:   3'- uAGCC-GUCGCG--GGuUUGCGCG-----------CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 11103 0.71 0.132695
Target:  5'- -cCGGCAGCGCCgCGcugcugaaaauguuuGgcauccacaucaGCGCGgGCGCCc -3'
miRNA:   3'- uaGCCGUCGCGG-GU---------------U------------UGCGCgCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 12105 0.71 0.138708
Target:  5'- -gUGGCGG-GCCUGgccGAUGgGCGCGCCg -3'
miRNA:   3'- uaGCCGUCgCGGGU---UUGCgCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 2973 0.71 0.138708
Target:  5'- -gCGGCcgcccgAGCGCggauggcugCCGAGCGUGCGCaGCCu -3'
miRNA:   3'- uaGCCG------UCGCG---------GGUUUGCGCGCG-CGG- -5'
23056 3' -61.1 NC_005178.1 + 33708 0.71 0.146576
Target:  5'- uUCGGUuuAGCGCCCAucCGCgaucuccugGCGUGCa -3'
miRNA:   3'- uAGCCG--UCGCGGGUuuGCG---------CGCGCGg -5'
23056 3' -61.1 NC_005178.1 + 3039 0.71 0.146576
Target:  5'- cUCGGCAggccauccGCGCUCGGGCGgccgcgaggauCGCGgGCCa -3'
miRNA:   3'- uAGCCGU--------CGCGGGUUUGC-----------GCGCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 27293 0.7 0.150661
Target:  5'- -cCGaGCAGaaGCuCCAGGCGCagcaGCGCGCCg -3'
miRNA:   3'- uaGC-CGUCg-CG-GGUUUGCG----CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 8906 0.7 0.150661
Target:  5'- gGUCGGUGGCGUCgGGGCucacacccgGCaCGCGCCg -3'
miRNA:   3'- -UAGCCGUCGCGGgUUUG---------CGcGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 34909 0.7 0.154849
Target:  5'- gGUCgGGCGGaauccaGCCCGGugGUGgCGgCGCCa -3'
miRNA:   3'- -UAG-CCGUCg-----CGGGUUugCGC-GC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.