miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23056 3' -61.1 NC_005178.1 + 8815 0.74 0.081242
Target:  5'- gGUCGGCaagaaAGuCGCCCG---GCGCGUGCCg -3'
miRNA:   3'- -UAGCCG-----UC-GCGGGUuugCGCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 6391 0.67 0.243701
Target:  5'- --gGGCGucuGCGCUCGAuuguCGCggcgagGCGCGCCg -3'
miRNA:   3'- uagCCGU---CGCGGGUUu---GCG------CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 17327 0.68 0.237469
Target:  5'- -aCGGCGGggccgagguCGCCCAGcucgGCaGCcCGCGCCg -3'
miRNA:   3'- uaGCCGUC---------GCGGGUU----UG-CGcGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 10298 0.68 0.227775
Target:  5'- cUCGGCGGCacguccuggcggauaGCCgagggcCGGGCGCggaggggcgaaGCGCGCCg -3'
miRNA:   3'- uAGCCGUCG---------------CGG------GUUUGCG-----------CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 8123 0.68 0.21957
Target:  5'- uUCGGUgaccaGGUGCCCGAGgGCGCcaucgagauCGCCc -3'
miRNA:   3'- uAGCCG-----UCGCGGGUUUgCGCGc--------GCGG- -5'
23056 3' -61.1 NC_005178.1 + 1282 0.68 0.213865
Target:  5'- -gCGGCAGCGUCCGAAuCGCucagagaCGCuGCUg -3'
miRNA:   3'- uaGCCGUCGCGGGUUU-GCGc------GCG-CGG- -5'
23056 3' -61.1 NC_005178.1 + 28187 0.68 0.213301
Target:  5'- cUCGGcCGGCGCCCuGGCGacugcuggcggcaCGCuccugagcgGCGCCg -3'
miRNA:   3'- uAGCC-GUCGCGGGuUUGC-------------GCG---------CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 6143 0.69 0.192304
Target:  5'- -gCGGUAGCGCCgCGAAgGCuaGCacaaGCCa -3'
miRNA:   3'- uaGCCGUCGCGG-GUUUgCGcgCG----CGG- -5'
23056 3' -61.1 NC_005178.1 + 23456 0.69 0.177406
Target:  5'- -aCGGCcagGGCGCCC-GGCGCGaa-GCCg -3'
miRNA:   3'- uaGCCG---UCGCGGGuUUGCGCgcgCGG- -5'
23056 3' -61.1 NC_005178.1 + 13070 0.7 0.172672
Target:  5'- -aCGGuCAGCGCguCCAAGCGCGUucUGCCc -3'
miRNA:   3'- uaGCC-GUCGCG--GGUUUGCGCGc-GCGG- -5'
23056 3' -61.1 NC_005178.1 + 16378 0.7 0.171274
Target:  5'- -gCGGCGGCGCCUAcgcccuGGgGCagguccauaacgagGUGCGCCa -3'
miRNA:   3'- uaGCCGUCGCGGGU------UUgCG--------------CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 31313 0.7 0.168052
Target:  5'- --gGGCuauGCGCCU-GGCGC-CGCGCCg -3'
miRNA:   3'- uagCCGu--CGCGGGuUUGCGcGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 8516 0.7 0.163542
Target:  5'- cGUCGGCgaAGCGCCgGaagucgaguuGACGguaGUGCGCCc -3'
miRNA:   3'- -UAGCCG--UCGCGGgU----------UUGCg--CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 27293 0.7 0.150661
Target:  5'- -cCGaGCAGaaGCuCCAGGCGCagcaGCGCGCCg -3'
miRNA:   3'- uaGC-CGUCg-CG-GGUUUGCG----CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 12105 0.71 0.138708
Target:  5'- -gUGGCGG-GCCUGgccGAUGgGCGCGCCg -3'
miRNA:   3'- uaGCCGUCgCGGGU---UUGCgCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 2973 0.71 0.138708
Target:  5'- -gCGGCcgcccgAGCGCggauggcugCCGAGCGUGCGCaGCCu -3'
miRNA:   3'- uaGCCG------UCGCG---------GGUUUGCGCGCG-CGG- -5'
23056 3' -61.1 NC_005178.1 + 11103 0.71 0.132695
Target:  5'- -cCGGCAGCGCCgCGcugcugaaaauguuuGgcauccacaucaGCGCGgGCGCCc -3'
miRNA:   3'- uaGCCGUCGCGG-GU---------------U------------UGCGCgCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 5878 0.72 0.117378
Target:  5'- cUCGGC--CGCCCAucguccAGCGCGagaCGCGCCg -3'
miRNA:   3'- uAGCCGucGCGGGU------UUGCGC---GCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 28141 0.74 0.081242
Target:  5'- -aUGGCGGCGCCCAGGgGCugacgGUcgGCGCCu -3'
miRNA:   3'- uaGCCGUCGCGGGUUUgCG-----CG--CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 30584 0.75 0.070395
Target:  5'- gGUCGGCAGCGacaCCuGGCGCGUGUaCCc -3'
miRNA:   3'- -UAGCCGUCGCg--GGuUUGCGCGCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.