Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23056 | 3' | -61.1 | NC_005178.1 | + | 31471 | 1.08 | 0.000166 |
Target: 5'- gAUCGGCAGCGCCCAAACGCGCGCGCCc -3' miRNA: 3'- -UAGCCGUCGCGGGUUUGCGCGCGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 10124 | 0.68 | 0.225405 |
Target: 5'- gGUCGGCGuaGCuCCAGGgGCGauggGCGCUg -3' miRNA: 3'- -UAGCCGUcgCG-GGUUUgCGCg---CGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 3942 | 0.68 | 0.231371 |
Target: 5'- -gCGGCGGCGgCCGguguucgggucAACGaUGCGCGgCa -3' miRNA: 3'- uaGCCGUCGCgGGU-----------UUGC-GCGCGCgG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 7490 | 0.66 | 0.321425 |
Target: 5'- -aCGGguGCuGCCgGccGAgGCGuCGCGCUg -3' miRNA: 3'- uaGCCguCG-CGGgU--UUgCGC-GCGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 29205 | 0.72 | 0.110974 |
Target: 5'- -aCaGCAGCGCCUGAACcCGCGgGCUg -3' miRNA: 3'- uaGcCGUCGCGGGUUUGcGCGCgCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 11205 | 0.72 | 0.110974 |
Target: 5'- --gGGCGGCGgCCAgGGCGCcCGCGCUg -3' miRNA: 3'- uagCCGUCGCgGGU-UUGCGcGCGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 10409 | 0.72 | 0.120707 |
Target: 5'- cUCGGcCAGCGCagCCcGGCGCGCuucgccccuccGCGCCc -3' miRNA: 3'- uAGCC-GUCGCG--GGuUUGCGCG-----------CGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 33708 | 0.71 | 0.146576 |
Target: 5'- uUCGGUuuAGCGCCCAucCGCgaucuccugGCGUGCa -3' miRNA: 3'- uAGCCG--UCGCGGGUuuGCG---------CGCGCGg -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 34909 | 0.7 | 0.154849 |
Target: 5'- gGUCgGGCGGaauccaGCCCGGugGUGgCGgCGCCa -3' miRNA: 3'- -UAG-CCGUCg-----CGGGUUugCGC-GC-GCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 9645 | 0.68 | 0.213865 |
Target: 5'- -gCGGCGacCGCCC-AGCGCaGCGCGgCg -3' miRNA: 3'- uaGCCGUc-GCGGGuUUGCG-CGCGCgG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 26068 | 0.7 | 0.163542 |
Target: 5'- gAUCGccCAGCGCCUgAAACGU-CGCGCCg -3' miRNA: 3'- -UAGCc-GUCGCGGG-UUUGCGcGCGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 8906 | 0.7 | 0.150661 |
Target: 5'- gGUCGGUGGCGUCgGGGCucacacccgGCaCGCGCCg -3' miRNA: 3'- -UAGCCGUCGCGGgUUUG---------CGcGCGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 27030 | 0.77 | 0.051223 |
Target: 5'- --aGGUAGCGaUCCAGGCGCGCcuucuGCGCCu -3' miRNA: 3'- uagCCGUCGC-GGGUUUGCGCG-----CGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 10364 | 0.69 | 0.197509 |
Target: 5'- cUCGGCuaucCGCCaGGACGUGC-CGCCg -3' miRNA: 3'- uAGCCGuc--GCGGgUUUGCGCGcGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 28277 | 0.76 | 0.057522 |
Target: 5'- -gCGGCGGCGCCgCucagGAGCGUGC-CGCCa -3' miRNA: 3'- uaGCCGUCGCGG-G----UUUGCGCGcGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 3039 | 0.71 | 0.146576 |
Target: 5'- cUCGGCAggccauccGCGCUCGGGCGgccgcgaggauCGCGgGCCa -3' miRNA: 3'- uAGCCGU--------CGCGGGUUUGC-----------GCGCgCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 26147 | 0.68 | 0.208287 |
Target: 5'- -gCGGCAGCGUCCGccccuCGgGCGaUGUCg -3' miRNA: 3'- uaGCCGUCGCGGGUuu---GCgCGC-GCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 12057 | 0.68 | 0.231371 |
Target: 5'- cUCGGCAGCaGCCCGGuaccaGCcCGCaCCa -3' miRNA: 3'- uAGCCGUCG-CGGGUUug---CGcGCGcGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 32339 | 0.74 | 0.086014 |
Target: 5'- -gUGGCGGCGCUacaGAGCGCcaugaaacagauGCGCGCUa -3' miRNA: 3'- uaGCCGUCGCGGg--UUUGCG------------CGCGCGG- -5' |
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23056 | 3' | -61.1 | NC_005178.1 | + | 29046 | 0.72 | 0.117378 |
Target: 5'- uAUCGGUGcCGCCCAGGCcagGgGCGCGCa -3' miRNA: 3'- -UAGCCGUcGCGGGUUUG---CgCGCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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