miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23056 3' -61.1 NC_005178.1 + 1282 0.68 0.213865
Target:  5'- -gCGGCAGCGUCCGAAuCGCucagagaCGCuGCUg -3'
miRNA:   3'- uaGCCGUCGCGGGUUU-GCGc------GCG-CGG- -5'
23056 3' -61.1 NC_005178.1 + 1519 0.67 0.243701
Target:  5'- cUgGGCGGCGUaguugcacucaCCAGGuauaGCGCGgGCCg -3'
miRNA:   3'- uAgCCGUCGCG-----------GGUUUg---CGCGCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 2742 0.67 0.248144
Target:  5'- uUCGGCAGgGCCgAAACGUGguacucauauccacCaccGCGCCc -3'
miRNA:   3'- uAGCCGUCgCGGgUUUGCGC--------------G---CGCGG- -5'
23056 3' -61.1 NC_005178.1 + 2774 0.7 0.154849
Target:  5'- --gGGCGGCGUUCAgcAGCGCG-GCGCg -3'
miRNA:   3'- uagCCGUCGCGGGU--UUGCGCgCGCGg -5'
23056 3' -61.1 NC_005178.1 + 2973 0.71 0.138708
Target:  5'- -gCGGCcgcccgAGCGCggauggcugCCGAGCGUGCGCaGCCu -3'
miRNA:   3'- uaGCCG------UCGCG---------GGUUUGCGCGCG-CGG- -5'
23056 3' -61.1 NC_005178.1 + 3039 0.71 0.146576
Target:  5'- cUCGGCAggccauccGCGCUCGGGCGgccgcgaggauCGCGgGCCa -3'
miRNA:   3'- uAGCCGU--------CGCGGGUUUGC-----------GCGCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 3942 0.68 0.231371
Target:  5'- -gCGGCGGCGgCCGguguucgggucAACGaUGCGCGgCa -3'
miRNA:   3'- uaGCCGUCGCgGGU-----------UUGC-GCGCGCgG- -5'
23056 3' -61.1 NC_005178.1 + 3978 0.68 0.237469
Target:  5'- uUCGuGCAGCGCCCAGGCuucguUGgGgGUCa -3'
miRNA:   3'- uAGC-CGUCGCGGGUUUGc----GCgCgCGG- -5'
23056 3' -61.1 NC_005178.1 + 4232 0.67 0.276918
Target:  5'- -aCGcGCAGagGCCC--GCGagaaGCGCGCCc -3'
miRNA:   3'- uaGC-CGUCg-CGGGuuUGCg---CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 5878 0.72 0.117378
Target:  5'- cUCGGC--CGCCCAucguccAGCGCGagaCGCGCCg -3'
miRNA:   3'- uAGCCGucGCGGGU------UUGCGC---GCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 6143 0.69 0.192304
Target:  5'- -gCGGUAGCGCCgCGAAgGCuaGCacaaGCCa -3'
miRNA:   3'- uaGCCGUCGCGG-GUUUgCGcgCG----CGG- -5'
23056 3' -61.1 NC_005178.1 + 6391 0.67 0.243701
Target:  5'- --gGGCGucuGCGCUCGAuuguCGCggcgagGCGCGCCg -3'
miRNA:   3'- uagCCGU---CGCGGGUUu---GCG------CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 7490 0.66 0.321425
Target:  5'- -aCGGguGCuGCCgGccGAgGCGuCGCGCUg -3'
miRNA:   3'- uaGCCguCG-CGGgU--UUgCGC-GCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 8123 0.68 0.21957
Target:  5'- uUCGGUgaccaGGUGCCCGAGgGCGCcaucgagauCGCCc -3'
miRNA:   3'- uAGCCG-----UCGCGGGUUUgCGCGc--------GCGG- -5'
23056 3' -61.1 NC_005178.1 + 8516 0.7 0.163542
Target:  5'- cGUCGGCgaAGCGCCgGaagucgaguuGACGguaGUGCGCCc -3'
miRNA:   3'- -UAGCCG--UCGCGGgU----------UUGCg--CGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 8815 0.74 0.081242
Target:  5'- gGUCGGCaagaaAGuCGCCCG---GCGCGUGCCg -3'
miRNA:   3'- -UAGCCG-----UC-GCGGGUuugCGCGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 8906 0.7 0.150661
Target:  5'- gGUCGGUGGCGUCgGGGCucacacccgGCaCGCGCCg -3'
miRNA:   3'- -UAGCCGUCGCGGgUUUG---------CGcGCGCGG- -5'
23056 3' -61.1 NC_005178.1 + 9645 0.68 0.213865
Target:  5'- -gCGGCGacCGCCC-AGCGCaGCGCGgCg -3'
miRNA:   3'- uaGCCGUc-GCGGGuUUGCG-CGCGCgG- -5'
23056 3' -61.1 NC_005178.1 + 9866 0.67 0.269996
Target:  5'- uAUCGcGCAuugcucgcucGCGUCgCGGGCGUGCGCucgGCCa -3'
miRNA:   3'- -UAGC-CGU----------CGCGG-GUUUGCGCGCG---CGG- -5'
23056 3' -61.1 NC_005178.1 + 10124 0.68 0.225405
Target:  5'- gGUCGGCGuaGCuCCAGGgGCGauggGCGCUg -3'
miRNA:   3'- -UAGCCGUcgCG-GGUUUgCGCg---CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.