Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 3468 | 0.67 | 0.310431 |
Target: 5'- cCUGGUGGUGGUCGaUGCCcuacgUGACg- -3' miRNA: 3'- cGGCCGCCGCCAGUgACGGa----ACUGga -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 5340 | 0.66 | 0.325972 |
Target: 5'- cGCCGGCccugaaCGGUgGCgGCCUcGGCCa -3' miRNA: 3'- -CGGCCGcc----GCCAgUGaCGGAaCUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 5480 | 0.67 | 0.288189 |
Target: 5'- uGCUGGCGGgGGcUC-UUGCCcccGACCa -3' miRNA: 3'- -CGGCCGCCgCC-AGuGACGGaa-CUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 6561 | 0.68 | 0.267219 |
Target: 5'- cGCaCGGUGGCGG-CGgUGaCCU-GGCCg -3' miRNA: 3'- -CG-GCCGCCGCCaGUgAC-GGAaCUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 7171 | 0.67 | 0.302875 |
Target: 5'- cGCCGGCcGCuGGagguacUCGCUGCaCUcGACCg -3' miRNA: 3'- -CGGCCGcCG-CC------AGUGACG-GAaCUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 8778 | 0.68 | 0.2475 |
Target: 5'- uGCgGGCGGCGGUCuuUGCa---ACCg -3' miRNA: 3'- -CGgCCGCCGCCAGugACGgaacUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 9679 | 0.69 | 0.235034 |
Target: 5'- aGCCGGCcgaGGCGGUCACcuUGCUccuacacaacgUUG-CCg -3' miRNA: 3'- -CGGCCG---CCGCCAGUG--ACGG-----------AACuGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 12086 | 0.68 | 0.274069 |
Target: 5'- cGCCuGGUGGaguGGUCGCguggcggGCCU-GGCCg -3' miRNA: 3'- -CGG-CCGCCg--CCAGUGa------CGGAaCUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 12414 | 0.68 | 0.2475 |
Target: 5'- cCCGGUGGCGGUgACUGa--UGACa- -3' miRNA: 3'- cGGCCGCCGCCAgUGACggaACUGga -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 12653 | 0.72 | 0.141193 |
Target: 5'- gGCuCGGCGGcCGGcgCGCUGgCgggUGGCCUg -3' miRNA: 3'- -CG-GCCGCC-GCCa-GUGACgGa--ACUGGA- -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 12917 | 0.66 | 0.346199 |
Target: 5'- gGCCGGUGGUGGgcuggaggacguggCGCgccaggugcuggccgGCCUggUGACCc -3' miRNA: 3'- -CGGCCGCCGCCa-------------GUGa--------------CGGA--ACUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 16703 | 0.66 | 0.333956 |
Target: 5'- gGCUGGCaGCGGgauucccaGCUGCUccuggacccagUUGACCg -3' miRNA: 3'- -CGGCCGcCGCCag------UGACGG-----------AACUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 17406 | 0.67 | 0.295461 |
Target: 5'- aGCCGGC-GCGG--GCUGCCgagcugggcGACCUc -3' miRNA: 3'- -CGGCCGcCGCCagUGACGGaa-------CUGGA- -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 20082 | 0.66 | 0.333956 |
Target: 5'- gGCCGGCaGCGGgCGCggGC--UGGCCg -3' miRNA: 3'- -CGGCCGcCGCCaGUGa-CGgaACUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 20435 | 0.76 | 0.064014 |
Target: 5'- gGCCGGCuucagGGCGGUCAggGCCgcaaUGGCCUc -3' miRNA: 3'- -CGGCCG-----CCGCCAGUgaCGGa---ACUGGA- -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 20945 | 0.68 | 0.260509 |
Target: 5'- gGUCGGUggucagGGCGGUCAUagcGCCUccuuacUGGCCUu -3' miRNA: 3'- -CGGCCG------CCGCCAGUGa--CGGA------ACUGGA- -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 21074 | 0.74 | 0.090216 |
Target: 5'- gGCCGGUGGCGGU-GCUGCCgc--CCa -3' miRNA: 3'- -CGGCCGCCGCCAgUGACGGaacuGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 24099 | 0.66 | 0.323605 |
Target: 5'- -aCGGUGGCGGUCuugccgauagggaaGCUGCgUaccagggcuuucUGGCCg -3' miRNA: 3'- cgGCCGCCGCCAG--------------UGACGgA------------ACUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 25697 | 0.69 | 0.216757 |
Target: 5'- uGCCGGUcgaacucGGCGGUgGCUuucgccgcaGCCUcGGCCg -3' miRNA: 3'- -CGGCCG-------CCGCCAgUGA---------CGGAaCUGGa -5' |
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23057 | 3' | -60.4 | NC_005178.1 | + | 25898 | 0.71 | 0.153314 |
Target: 5'- uGCCGGCGcagaucaccgacGUGGUCACcaGCCU-GGCCa -3' miRNA: 3'- -CGGCCGC------------CGCCAGUGa-CGGAaCUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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