miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23057 3' -60.4 NC_005178.1 + 26089 0.67 0.295461
Target:  5'- cCCGaGgGGCGGaCGCUGCCgcagcgucGGCCa -3'
miRNA:   3'- cGGC-CgCCGCCaGUGACGGaa------CUGGa -5'
23057 3' -60.4 NC_005178.1 + 26181 0.7 0.190357
Target:  5'- gGCgCGGCGGUGGcCGCUGCgggcgUGGCgCUg -3'
miRNA:   3'- -CG-GCCGCCGCCaGUGACGga---ACUG-GA- -5'
23057 3' -60.4 NC_005178.1 + 26312 0.66 0.36731
Target:  5'- cGCCauGGCGGC-GUCACUcGCCagGGCg- -3'
miRNA:   3'- -CGG--CCGCCGcCAGUGA-CGGaaCUGga -5'
23057 3' -60.4 NC_005178.1 + 27578 0.66 0.342082
Target:  5'- gGUCGGCGuCGGcCuucuuCUgcGCCUUGACCa -3'
miRNA:   3'- -CGGCCGCcGCCaGu----GA--CGGAACUGGa -5'
23057 3' -60.4 NC_005178.1 + 28234 0.66 0.333956
Target:  5'- cGCCGGCcgaGGCGGaUACaGCCgaggcgccGACCg -3'
miRNA:   3'- -CGGCCG---CCGCCaGUGaCGGaa------CUGGa -5'
23057 3' -60.4 NC_005178.1 + 28293 0.71 0.153314
Target:  5'- aCCGGCGcuGCGGgaGCUGCCggGGCCg -3'
miRNA:   3'- cGGCCGC--CGCCagUGACGGaaCUGGa -5'
23057 3' -60.4 NC_005178.1 + 30791 0.8 0.031868
Target:  5'- cGCCuGGCaGCGGUCGCgGCCUcGACCUg -3'
miRNA:   3'- -CGG-CCGcCGCCAGUGaCGGAaCUGGA- -5'
23057 3' -60.4 NC_005178.1 + 31636 0.97 0.001751
Target:  5'- gGCCGGCGGCGG-UACUGCCUUGACCUc -3'
miRNA:   3'- -CGGCCGCCGCCaGUGACGGAACUGGA- -5'
23057 3' -60.4 NC_005178.1 + 35160 0.66 0.342082
Target:  5'- aGCCGGCuGGaggacGUCACUGUCggccaGGCCg -3'
miRNA:   3'- -CGGCCG-CCgc---CAGUGACGGaa---CUGGa -5'
23057 3' -60.4 NC_005178.1 + 35473 0.71 0.170941
Target:  5'- uGUCGGUGGCGGcCAgcGCCggGGCCa -3'
miRNA:   3'- -CGGCCGCCGCCaGUgaCGGaaCUGGa -5'
23057 3' -60.4 NC_005178.1 + 35712 0.66 0.333956
Target:  5'- gGCCGGCGuaGGUgCGCuucagcgucgUGCCgcuguaGACCUg -3'
miRNA:   3'- -CGGCCGCcgCCA-GUG----------ACGGaa----CUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.