Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 9679 | 0.69 | 0.235034 |
Target: 5'- aGCCGGCcgaGGCGGUCACcuUGCUccuacacaacgUUG-CCg -3' miRNA: 3'- -CGGCCG---CCGCCAGUG--ACGG-----------AACuGGa -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 25697 | 0.69 | 0.216757 |
Target: 5'- uGCCGGUcgaacucGGCGGUgGCUuucgccgcaGCCUcGGCCg -3' miRNA: 3'- -CGGCCG-------CCGCCAgUGA---------CGGAaCUGGa -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 26181 | 0.7 | 0.190357 |
Target: 5'- gGCgCGGCGGUGGcCGCUGCgggcgUGGCgCUg -3' miRNA: 3'- -CG-GCCGCCGCCaGUGACGga---ACUG-GA- -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 35473 | 0.71 | 0.170941 |
Target: 5'- uGUCGGUGGCGGcCAgcGCCggGGCCa -3' miRNA: 3'- -CGGCCGCCGCCaGUgaCGGaaCUGGa -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 25898 | 0.71 | 0.153314 |
Target: 5'- uGCCGGCGcagaucaccgacGUGGUCACcaGCCU-GGCCa -3' miRNA: 3'- -CGGCCGC------------CGCCAGUGa-CGGAaCUGGa -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 28293 | 0.71 | 0.153314 |
Target: 5'- aCCGGCGcuGCGGgaGCUGCCggGGCCg -3' miRNA: 3'- cGGCCGC--CGCCagUGACGGaaCUGGa -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 12653 | 0.72 | 0.141193 |
Target: 5'- gGCuCGGCGGcCGGcgCGCUGgCgggUGGCCUg -3' miRNA: 3'- -CG-GCCGCC-GCCa-GUGACgGa--ACUGGA- -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 21074 | 0.74 | 0.090216 |
Target: 5'- gGCCGGUGGCGGU-GCUGCCgc--CCa -3' miRNA: 3'- -CGGCCGCCGCCAgUGACGGaacuGGa -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 20435 | 0.76 | 0.064014 |
Target: 5'- gGCCGGCuucagGGCGGUCAggGCCgcaaUGGCCUc -3' miRNA: 3'- -CGGCCG-----CCGCCAGUgaCGGa---ACUGGA- -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 30791 | 0.8 | 0.031868 |
Target: 5'- cGCCuGGCaGCGGUCGCgGCCUcGACCUg -3' miRNA: 3'- -CGG-CCGcCGCCAGUGaCGGAaCUGGA- -5' |
|||||||
23057 | 3' | -60.4 | NC_005178.1 | + | 31636 | 0.97 | 0.001751 |
Target: 5'- gGCCGGCGGCGG-UACUGCCUUGACCUc -3' miRNA: 3'- -CGGCCGCCGCCaGUGACGGAACUGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home