miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23057 3' -60.4 NC_005178.1 + 16703 0.66 0.333956
Target:  5'- gGCUGGCaGCGGgauucccaGCUGCUccuggacccagUUGACCg -3'
miRNA:   3'- -CGGCCGcCGCCag------UGACGG-----------AACUGGa -5'
23057 3' -60.4 NC_005178.1 + 17406 0.67 0.295461
Target:  5'- aGCCGGC-GCGG--GCUGCCgagcugggcGACCUc -3'
miRNA:   3'- -CGGCCGcCGCCagUGACGGaa-------CUGGA- -5'
23057 3' -60.4 NC_005178.1 + 5480 0.67 0.288189
Target:  5'- uGCUGGCGGgGGcUC-UUGCCcccGACCa -3'
miRNA:   3'- -CGGCCGCCgCC-AGuGACGGaa-CUGGa -5'
23057 3' -60.4 NC_005178.1 + 6561 0.68 0.267219
Target:  5'- cGCaCGGUGGCGG-CGgUGaCCU-GGCCg -3'
miRNA:   3'- -CG-GCCGCCGCCaGUgAC-GGAaCUGGa -5'
23057 3' -60.4 NC_005178.1 + 20945 0.68 0.260509
Target:  5'- gGUCGGUggucagGGCGGUCAUagcGCCUccuuacUGGCCUu -3'
miRNA:   3'- -CGGCCG------CCGCCAGUGa--CGGA------ACUGGA- -5'
23057 3' -60.4 NC_005178.1 + 25697 0.69 0.216757
Target:  5'- uGCCGGUcgaacucGGCGGUgGCUuucgccgcaGCCUcGGCCg -3'
miRNA:   3'- -CGGCCG-------CCGCCAgUGA---------CGGAaCUGGa -5'
23057 3' -60.4 NC_005178.1 + 35473 0.71 0.170941
Target:  5'- uGUCGGUGGCGGcCAgcGCCggGGCCa -3'
miRNA:   3'- -CGGCCGCCGCCaGUgaCGGaaCUGGa -5'
23057 3' -60.4 NC_005178.1 + 21074 0.74 0.090216
Target:  5'- gGCCGGUGGCGGU-GCUGCCgc--CCa -3'
miRNA:   3'- -CGGCCGCCGCCAgUGACGGaacuGGa -5'
23057 3' -60.4 NC_005178.1 + 20435 0.76 0.064014
Target:  5'- gGCCGGCuucagGGCGGUCAggGCCgcaaUGGCCUc -3'
miRNA:   3'- -CGGCCG-----CCGCCAGUgaCGGa---ACUGGA- -5'
23057 3' -60.4 NC_005178.1 + 31636 0.97 0.001751
Target:  5'- gGCCGGCGGCGG-UACUGCCUUGACCUc -3'
miRNA:   3'- -CGGCCGCCGCCaGUGACGGAACUGGA- -5'
23057 3' -60.4 NC_005178.1 + 27578 0.66 0.342082
Target:  5'- gGUCGGCGuCGGcCuucuuCUgcGCCUUGACCa -3'
miRNA:   3'- -CGGCCGCcGCCaGu----GA--CGGAACUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.