miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23059 5' -53.7 NC_005178.1 + 35528 0.69 0.48796
Target:  5'- aUGCGgaacuGGCCGGGCgggUACGGcuuaccuuGGCGCCc -3'
miRNA:   3'- cACGUau---CUGGUCCG---AUGCC--------UUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 9213 0.69 0.486891
Target:  5'- gGUGUAUAcGGCCAuGGCUAUGccuccuucugugcGGAUGCCu -3'
miRNA:   3'- -CACGUAU-CUGGU-CCGAUGC-------------CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 18333 0.69 0.520532
Target:  5'- -aGCugGUGGACCgcgAGGUccaGGAGCGCCu -3'
miRNA:   3'- caCG--UAUCUGG---UCCGaugCCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 12643 0.69 0.520532
Target:  5'- cGUGCuGUAcggcucggcGGCCGGcGCgcugGCGGGugGCCu -3'
miRNA:   3'- -CACG-UAU---------CUGGUC-CGa---UGCCUugCGG- -5'
23059 5' -53.7 NC_005178.1 + 18735 0.68 0.576531
Target:  5'- -----aGGACCGGGaggUACGGGcGCGCCg -3'
miRNA:   3'- cacguaUCUGGUCCg--AUGCCU-UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 10575 0.68 0.576531
Target:  5'- -cGCu--GAgCAGGCUACGGGcgguuUGCCc -3'
miRNA:   3'- caCGuauCUgGUCCGAUGCCUu----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 25982 0.68 0.531581
Target:  5'- -gGCAUcccgcuGGCCAGGCUGgugaccacguCGGugaucuGCGCCg -3'
miRNA:   3'- caCGUAu-----CUGGUCCGAU----------GCCu-----UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 32713 0.68 0.531581
Target:  5'- aGUGCAUGucguagacGACCAGGUcgACGGcacCGCUc -3'
miRNA:   3'- -CACGUAU--------CUGGUCCGa-UGCCuu-GCGG- -5'
23059 5' -53.7 NC_005178.1 + 34729 0.68 0.528257
Target:  5'- -gGCcagGGuuCAGGCUACGGGcgcggcggucgaacACGCCc -3'
miRNA:   3'- caCGua-UCugGUCCGAUGCCU--------------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 27259 0.68 0.553921
Target:  5'- -cGCcUGGACCA-GUUGCaaaccgauuucaGGAACGCCg -3'
miRNA:   3'- caCGuAUCUGGUcCGAUG------------CCUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 11009 0.67 0.645238
Target:  5'- -cGCGgGGGgCAGGagGCGGGccGCGCCg -3'
miRNA:   3'- caCGUaUCUgGUCCgaUGCCU--UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 22067 0.67 0.645238
Target:  5'- -aGCAggaACCAGGCgguguCGGAcucgauACGCCc -3'
miRNA:   3'- caCGUaucUGGUCCGau---GCCU------UGCGG- -5'
23059 5' -53.7 NC_005178.1 + 30286 0.67 0.633755
Target:  5'- gGUGCGacGACCAGuuGCU-UGuGAGCGCCu -3'
miRNA:   3'- -CACGUauCUGGUC--CGAuGC-CUUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 5219 0.67 0.633755
Target:  5'- -gGCuGUAGaccggcGCCAGGUUGCGG-GCGUCc -3'
miRNA:   3'- caCG-UAUC------UGGUCCGAUGCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 13188 0.67 0.633755
Target:  5'- -aGCu--GGCCAGGCgcUGGAGCaCCu -3'
miRNA:   3'- caCGuauCUGGUCCGauGCCUUGcGG- -5'
23059 5' -53.7 NC_005178.1 + 16588 0.67 0.62227
Target:  5'- -gGuCGaAGACCAGGCgg-GGGGCGCg -3'
miRNA:   3'- caC-GUaUCUGGUCCGaugCCUUGCGg -5'
23059 5' -53.7 NC_005178.1 + 21285 0.67 0.610795
Target:  5'- aUGCGgccGGCCGGGgaGCGGGuuucggUGCCg -3'
miRNA:   3'- cACGUau-CUGGUCCgaUGCCUu-----GCGG- -5'
23059 5' -53.7 NC_005178.1 + 20034 0.67 0.610795
Target:  5'- gGUGCucGUAGuCCAGGacggGCGGAgucuuGCGCg -3'
miRNA:   3'- -CACG--UAUCuGGUCCga--UGCCU-----UGCGg -5'
23059 5' -53.7 NC_005178.1 + 34834 0.67 0.586775
Target:  5'- -gGCGUGGcgccgccaccACCGGGCUGgauuccgcccgacCGG-ACGCCu -3'
miRNA:   3'- caCGUAUC----------UGGUCCGAU-------------GCCuUGCGG- -5'
23059 5' -53.7 NC_005178.1 + 34172 0.67 0.587915
Target:  5'- -cGCGaaUGGACgAGGCgagcugGCGGGcCGCUg -3'
miRNA:   3'- caCGU--AUCUGgUCCGa-----UGCCUuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.