Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23059 | 5' | -53.7 | NC_005178.1 | + | 15816 | 0.67 | 0.633755 |
Target: 5'- uUGCAUGGACgGcgucGGCcACGGcuauAGCGCUa -3' miRNA: 3'- cACGUAUCUGgU----CCGaUGCC----UUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 30286 | 0.67 | 0.633755 |
Target: 5'- gGUGCGacGACCAGuuGCU-UGuGAGCGCCu -3' miRNA: 3'- -CACGUauCUGGUC--CGAuGC-CUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 5219 | 0.67 | 0.633755 |
Target: 5'- -gGCuGUAGaccggcGCCAGGUUGCGG-GCGUCc -3' miRNA: 3'- caCG-UAUC------UGGUCCGAUGCCuUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 13188 | 0.67 | 0.633755 |
Target: 5'- -aGCu--GGCCAGGCgcUGGAGCaCCu -3' miRNA: 3'- caCGuauCUGGUCCGauGCCUUGcGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 16588 | 0.67 | 0.62227 |
Target: 5'- -gGuCGaAGACCAGGCgg-GGGGCGCg -3' miRNA: 3'- caC-GUaUCUGGUCCGaugCCUUGCGg -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 21285 | 0.67 | 0.610795 |
Target: 5'- aUGCGgccGGCCGGGgaGCGGGuuucggUGCCg -3' miRNA: 3'- cACGUau-CUGGUCCgaUGCCUu-----GCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 20034 | 0.67 | 0.610795 |
Target: 5'- gGUGCucGUAGuCCAGGacggGCGGAgucuuGCGCg -3' miRNA: 3'- -CACG--UAUCuGGUCCga--UGCCU-----UGCGg -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 24430 | 0.67 | 0.59934 |
Target: 5'- -gGCAUcaACCuGGCcgaagGCGGcGCGCCg -3' miRNA: 3'- caCGUAucUGGuCCGa----UGCCuUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 1886 | 0.67 | 0.59934 |
Target: 5'- -gGCccUGGugCAGGCUGaGGAGuauCGCCa -3' miRNA: 3'- caCGu-AUCugGUCCGAUgCCUU---GCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 34172 | 0.67 | 0.587915 |
Target: 5'- -cGCGaaUGGACgAGGCgagcugGCGGGcCGCUg -3' miRNA: 3'- caCGU--AUCUGgUCCGa-----UGCCUuGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 34834 | 0.67 | 0.586775 |
Target: 5'- -gGCGUGGcgccgccaccACCGGGCUGgauuccgcccgacCGG-ACGCCu -3' miRNA: 3'- caCGUAUC----------UGGUCCGAU-------------GCCuUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 18735 | 0.68 | 0.576531 |
Target: 5'- -----aGGACCGGGaggUACGGGcGCGCCg -3' miRNA: 3'- cacguaUCUGGUCCg--AUGCCU-UGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 10575 | 0.68 | 0.576531 |
Target: 5'- -cGCu--GAgCAGGCUACGGGcgguuUGCCc -3' miRNA: 3'- caCGuauCUgGUCCGAUGCCUu----GCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 27259 | 0.68 | 0.553921 |
Target: 5'- -cGCcUGGACCA-GUUGCaaaccgauuucaGGAACGCCg -3' miRNA: 3'- caCGuAUCUGGUcCGAUG------------CCUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 32713 | 0.68 | 0.531581 |
Target: 5'- aGUGCAUGucguagacGACCAGGUcgACGGcacCGCUc -3' miRNA: 3'- -CACGUAU--------CUGGUCCGa-UGCCuu-GCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 25982 | 0.68 | 0.531581 |
Target: 5'- -gGCAUcccgcuGGCCAGGCUGgugaccacguCGGugaucuGCGCCg -3' miRNA: 3'- caCGUAu-----CUGGUCCGAU----------GCCu-----UGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 34729 | 0.68 | 0.528257 |
Target: 5'- -gGCcagGGuuCAGGCUACGGGcgcggcggucgaacACGCCc -3' miRNA: 3'- caCGua-UCugGUCCGAUGCCU--------------UGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 37186 | 0.69 | 0.521634 |
Target: 5'- -aGCuccUGGACCucGGCgaggaggucgucgggAUGGAACGCCa -3' miRNA: 3'- caCGu--AUCUGGu-CCGa--------------UGCCUUGCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 12643 | 0.69 | 0.520532 |
Target: 5'- cGUGCuGUAcggcucggcGGCCGGcGCgcugGCGGGugGCCu -3' miRNA: 3'- -CACG-UAU---------CUGGUC-CGa---UGCCUugCGG- -5' |
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23059 | 5' | -53.7 | NC_005178.1 | + | 18333 | 0.69 | 0.520532 |
Target: 5'- -aGCugGUGGACCgcgAGGUccaGGAGCGCCu -3' miRNA: 3'- caCG--UAUCUGG---UCCGaugCCUUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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