miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23060 3' -58 NC_005178.1 + 11212 0.66 0.484194
Target:  5'- --cGCCCGGCUGuucugcACCAUcgUCGCGuccAGCg -3'
miRNA:   3'- ugcCGGGCCGGC------UGGUA--AGCGCu--UUG- -5'
23060 3' -58 NC_005178.1 + 25325 0.66 0.484194
Target:  5'- uCGGCCCGcUUGGCCAggCGCuGGAAa -3'
miRNA:   3'- uGCCGGGCcGGCUGGUaaGCG-CUUUg -5'
23060 3' -58 NC_005178.1 + 16520 0.66 0.473943
Target:  5'- cGCGGCCCaGGUaggucaGGCCggUgGCGguGCu -3'
miRNA:   3'- -UGCCGGG-CCGg-----CUGGuaAgCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 28986 0.66 0.473943
Target:  5'- cCGGCUCGGCCugcggcauGACCAaUUGacuGggGCg -3'
miRNA:   3'- uGCCGGGCCGG--------CUGGUaAGCg--CuuUG- -5'
23060 3' -58 NC_005178.1 + 27297 0.66 0.473943
Target:  5'- gUGGCCggcaGGCCGaugcguccgGCCAUgUCGCGGAc- -3'
miRNA:   3'- uGCCGGg---CCGGC---------UGGUA-AGCGCUUug -5'
23060 3' -58 NC_005178.1 + 14964 0.66 0.473943
Target:  5'- gUGGUCgGGCCG-CCAUcCGC-AAGCg -3'
miRNA:   3'- uGCCGGgCCGGCuGGUAaGCGcUUUG- -5'
23060 3' -58 NC_005178.1 + 24591 0.66 0.467846
Target:  5'- gUGGCCUggaacugggucaccaGGCCGGCCAgcaccuggCGCGccACg -3'
miRNA:   3'- uGCCGGG---------------CCGGCUGGUaa------GCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 15671 0.66 0.463803
Target:  5'- -aGcGCCgGGCCGACCAggaGCacguuggggGAGACg -3'
miRNA:   3'- ugC-CGGgCCGGCUGGUaagCG---------CUUUG- -5'
23060 3' -58 NC_005178.1 + 3635 0.66 0.463803
Target:  5'- cCGGCaCCaGGCCGccgagcaucgccGCCAggCGCGGcagGACg -3'
miRNA:   3'- uGCCG-GG-CCGGC------------UGGUaaGCGCU---UUG- -5'
23060 3' -58 NC_005178.1 + 9691 0.66 0.463803
Target:  5'- gGCGGCCUggaGGUCGGCguagUUGCGuuGCa -3'
miRNA:   3'- -UGCCGGG---CCGGCUGgua-AGCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 32112 0.66 0.463803
Target:  5'- aAUGG-UCGGCCGGgCcgUCGCGAc-- -3'
miRNA:   3'- -UGCCgGGCCGGCUgGuaAGCGCUuug -5'
23060 3' -58 NC_005178.1 + 34992 0.66 0.443869
Target:  5'- cUGGCCgagGcGCCGACCAgccugUCGCaGAGCu -3'
miRNA:   3'- uGCCGGg--C-CGGCUGGUa----AGCGcUUUG- -5'
23060 3' -58 NC_005178.1 + 25763 0.66 0.442885
Target:  5'- cUGGUCCaugugcaGGCCGGCCugcgGCGGAACc -3'
miRNA:   3'- uGCCGGG-------CCGGCUGGuaagCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 30805 0.66 0.442885
Target:  5'- cGCGGCCUcgaccugGGCCGGCgucuaCGCGgcGCa -3'
miRNA:   3'- -UGCCGGG-------CCGGCUGguaa-GCGCuuUG- -5'
23060 3' -58 NC_005178.1 + 4913 0.66 0.434085
Target:  5'- cCGGaaaUGGCCGACCAgaUCGCcgaGGAACu -3'
miRNA:   3'- uGCCgg-GCCGGCUGGUa-AGCG---CUUUG- -5'
23060 3' -58 NC_005178.1 + 27881 0.67 0.424427
Target:  5'- gACcGCCuCGGCCGGCUcg--GCGAAGCc -3'
miRNA:   3'- -UGcCGG-GCCGGCUGGuaagCGCUUUG- -5'
23060 3' -58 NC_005178.1 + 19351 0.67 0.424427
Target:  5'- uUGGCCCGGCCcauagacGCCAc-CGCGcAGCc -3'
miRNA:   3'- uGCCGGGCCGGc------UGGUaaGCGCuUUG- -5'
23060 3' -58 NC_005178.1 + 26070 0.67 0.424427
Target:  5'- gACGGCCUGGaCGACa--UCGCccgaGggGCg -3'
miRNA:   3'- -UGCCGGGCCgGCUGguaAGCG----CuuUG- -5'
23060 3' -58 NC_005178.1 + 32289 0.67 0.414898
Target:  5'- gGCGGCCuCGGCCaacugcuCCAgguuaacCGCGAcGCg -3'
miRNA:   3'- -UGCCGG-GCCGGcu-----GGUaa-----GCGCUuUG- -5'
23060 3' -58 NC_005178.1 + 8922 0.67 0.414898
Target:  5'- uCGGCCCGGCUu-CCGUgCGCuGggGg -3'
miRNA:   3'- uGCCGGGCCGGcuGGUAaGCG-CuuUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.