miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23063 5' -60 NC_005178.1 + 9662 0.66 0.397162
Target:  5'- gGCCGGUGGCUuCGCCGagccggccgaGGcGGUCAc -3'
miRNA:   3'- -CGGCCGCUGGuGCGGCga--------CCuCUAGU- -5'
23063 5' -60 NC_005178.1 + 25098 0.66 0.370568
Target:  5'- gGCaGGCGAagacucgaccCCACGuuGUUGGAGggCu -3'
miRNA:   3'- -CGgCCGCU----------GGUGCggCGACCUCuaGu -5'
23063 5' -60 NC_005178.1 + 28287 0.66 0.353526
Target:  5'- gGCCuggauaGCGGCgGCGCCGCUcaGGAGcgUg -3'
miRNA:   3'- -CGGc-----CGCUGgUGCGGCGA--CCUCuaGu -5'
23063 5' -60 NC_005178.1 + 6551 0.66 0.388161
Target:  5'- cGgCGGUGACCugGCCGaaCUGGc--UCAc -3'
miRNA:   3'- -CgGCCGCUGGugCGGC--GACCucuAGU- -5'
23063 5' -60 NC_005178.1 + 30863 0.66 0.353526
Target:  5'- cGCCGGCccaggucgaGGCCGCGaCCGCUGccaggcGGAUg- -3'
miRNA:   3'- -CGGCCG---------CUGGUGC-GGCGACc-----UCUAgu -5'
23063 5' -60 NC_005178.1 + 16206 0.66 0.353526
Target:  5'- aCCGGCcucGGCCAUGCCGCaGcGGGcAUUAu -3'
miRNA:   3'- cGGCCG---CUGGUGCGGCGaC-CUC-UAGU- -5'
23063 5' -60 NC_005178.1 + 34820 0.66 0.397162
Target:  5'- uGCCGGCGACaaccggcgugGCGCCGCcaccaccgGGcuGGAUUc -3'
miRNA:   3'- -CGGCCGCUGg---------UGCGGCGa-------CC--UCUAGu -5'
23063 5' -60 NC_005178.1 + 16719 0.66 0.396256
Target:  5'- aGCCGGCGcCCugGUccucgcaucgcugCGCUGGcccAGGUg- -3'
miRNA:   3'- -CGGCCGCuGGugCG-------------GCGACC---UCUAgu -5'
23063 5' -60 NC_005178.1 + 31902 0.66 0.388161
Target:  5'- cGCCGG-GAUgGCGCUGCcGGucAUCGg -3'
miRNA:   3'- -CGGCCgCUGgUGCGGCGaCCucUAGU- -5'
23063 5' -60 NC_005178.1 + 3771 0.66 0.387269
Target:  5'- cGCCaagGGCGgcACCAUGCCGCUGaugucuuGGGAa-- -3'
miRNA:   3'- -CGG---CCGC--UGGUGCGGCGAC-------CUCUagu -5'
23063 5' -60 NC_005178.1 + 16379 0.66 0.370568
Target:  5'- cGgCGGCGcCUACGCC-CUGGGGcagGUCc -3'
miRNA:   3'- -CgGCCGCuGGUGCGGcGACCUC---UAGu -5'
23063 5' -60 NC_005178.1 + 7127 0.66 0.370568
Target:  5'- gGCCGGCGccgcugaacaACCccgucgcgauGCGCUGCUGGAa---- -3'
miRNA:   3'- -CGGCCGC----------UGG----------UGCGGCGACCUcuagu -5'
23063 5' -60 NC_005178.1 + 5550 0.66 0.361977
Target:  5'- cGCCugGGCGGCUACGUCGa-GGcGAUCc -3'
miRNA:   3'- -CGG--CCGCUGGUGCGGCgaCCuCUAGu -5'
23063 5' -60 NC_005178.1 + 16558 0.66 0.353526
Target:  5'- aCCGGgcCGACCugGCCGCcaUGGcaacGUCAu -3'
miRNA:   3'- cGGCC--GCUGGugCGGCG--ACCuc--UAGU- -5'
23063 5' -60 NC_005178.1 + 28073 0.67 0.337047
Target:  5'- gGCCaggauGGCGACC-CGCCaGCUaGGGGcGUCu -3'
miRNA:   3'- -CGG-----CCGCUGGuGCGG-CGA-CCUC-UAGu -5'
23063 5' -60 NC_005178.1 + 30820 0.67 0.321915
Target:  5'- gGCCGGCGuCUACGCgGCgcaucagccgguagaGGuGAUCc -3'
miRNA:   3'- -CGGCCGCuGGUGCGgCGa--------------CCuCUAGu -5'
23063 5' -60 NC_005178.1 + 28293 0.67 0.321133
Target:  5'- aCCGGCGcugcgggagcuGCCgGgGCCGCUGGAGuggCu -3'
miRNA:   3'- cGGCCGC-----------UGG-UgCGGCGACCUCua-Gu -5'
23063 5' -60 NC_005178.1 + 9575 0.67 0.305789
Target:  5'- uGCCcuGCG-CCGCGCugCGCUGGGcGGUCGc -3'
miRNA:   3'- -CGGc-CGCuGGUGCG--GCGACCU-CUAGU- -5'
23063 5' -60 NC_005178.1 + 9718 0.67 0.31339
Target:  5'- gGCuCGGCGaaGCCACcgGCCGCgc-AGAUCAg -3'
miRNA:   3'- -CG-GCCGC--UGGUG--CGGCGaccUCUAGU- -5'
23063 5' -60 NC_005178.1 + 25966 0.67 0.31339
Target:  5'- gGCUGGUGACCACGUC---GGuGAUCu -3'
miRNA:   3'- -CGGCCGCUGGUGCGGcgaCCuCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.