Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23063 | 5' | -60 | NC_005178.1 | + | 36140 | 0.72 | 0.146842 |
Target: 5'- aGgUGGCGaacgagGCCACGCCuGCUGGccAGGUCAa -3' miRNA: 3'- -CgGCCGC------UGGUGCGG-CGACC--UCUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 30820 | 0.67 | 0.321915 |
Target: 5'- gGCCGGCGuCUACGCgGCgcaucagccgguagaGGuGAUCc -3' miRNA: 3'- -CGGCCGCuGGUGCGgCGa--------------CCuCUAGu -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 28293 | 0.67 | 0.321133 |
Target: 5'- aCCGGCGcugcgggagcuGCCgGgGCCGCUGGAGuggCu -3' miRNA: 3'- cGGCCGC-----------UGG-UgCGGCGACCUCua-Gu -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 11997 | 0.67 | 0.321133 |
Target: 5'- gGCUGGU-ACCGgGCUGCUGccGAGGUCu -3' miRNA: 3'- -CGGCCGcUGGUgCGGCGAC--CUCUAGu -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 4948 | 0.67 | 0.321133 |
Target: 5'- cGCCaGCGGCCGC-CCGCU---GAUCAu -3' miRNA: 3'- -CGGcCGCUGGUGcGGCGAccuCUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 24586 | 0.67 | 0.31339 |
Target: 5'- aCCGGCGACCugGgCCGCUucGGccg-CAu -3' miRNA: 3'- cGGCCGCUGGugC-GGCGA--CCucuaGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 9575 | 0.67 | 0.305789 |
Target: 5'- uGCCcuGCG-CCGCGCugCGCUGGGcGGUCGc -3' miRNA: 3'- -CGGc-CGCuGGUGCG--GCGACCU-CUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 22674 | 0.68 | 0.29833 |
Target: 5'- aGCCcagGGCGACCuCGCCcaggccgaGCUGGAucgccgGGUCGc -3' miRNA: 3'- -CGG---CCGCUGGuGCGG--------CGACCU------CUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 28190 | 0.68 | 0.29833 |
Target: 5'- gGCCGGCGcCCugGCgacUGCUGGcGG-CAc -3' miRNA: 3'- -CGGCCGCuGGugCG---GCGACCuCUaGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 11101 | 0.68 | 0.29833 |
Target: 5'- gGCCGGCagcGCCGCGCUGCUGa------ -3' miRNA: 3'- -CGGCCGc--UGGUGCGGCGACcucuagu -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 10252 | 0.68 | 0.29612 |
Target: 5'- gGCCGGacgcaucggccugcCGGCCACGCUGgUGGuaGUCGa -3' miRNA: 3'- -CGGCC--------------GCUGGUGCGGCgACCucUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 12299 | 0.68 | 0.293923 |
Target: 5'- cGCUGGUGAUCGCGCUgccugccgcuuuccuGCUGGc-GUCAu -3' miRNA: 3'- -CGGCCGCUGGUGCGG---------------CGACCucUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 26000 | 0.68 | 0.283837 |
Target: 5'- cGUCGGCG-CgACGUuucaggCGCUGGGcGAUCAg -3' miRNA: 3'- -CGGCCGCuGgUGCG------GCGACCU-CUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 31593 | 0.68 | 0.279599 |
Target: 5'- cGCCGGCcugGACCugGuCCGCcccguccaggccaccUGGGGAa-- -3' miRNA: 3'- -CGGCCG---CUGGugC-GGCG---------------ACCUCUagu -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 31769 | 0.69 | 0.256532 |
Target: 5'- uGCCGGCGACgACcuacagggggcgGCCaguGCUGGAGcagCAc -3' miRNA: 3'- -CGGCCGCUGgUG------------CGG---CGACCUCua-GU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 12653 | 0.69 | 0.256532 |
Target: 5'- gGCuCGGCGGCCG-GCgCGCUGGcGGGUg- -3' miRNA: 3'- -CG-GCCGCUGGUgCG-GCGACC-UCUAgu -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 31321 | 0.69 | 0.25005 |
Target: 5'- cGCCuGGCG-CCGCGCCG--GGAGuUCGa -3' miRNA: 3'- -CGG-CCGCuGGUGCGGCgaCCUCuAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 32832 | 0.7 | 0.202969 |
Target: 5'- cGuuGGCGACCAuCGCUGCa--AGGUCAa -3' miRNA: 3'- -CggCCGCUGGU-GCGGCGaccUCUAGU- -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 17348 | 0.71 | 0.172884 |
Target: 5'- aGCuCGGCaGcCCGCGCCGgCUGGAaacGAUCu -3' miRNA: 3'- -CG-GCCG-CuGGUGCGGC-GACCU---CUAGu -5' |
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23063 | 5' | -60 | NC_005178.1 | + | 25344 | 0.74 | 0.105216 |
Target: 5'- cGCUGGCGACCAUGCCagccagGCUGGccgGGAg-- -3' miRNA: 3'- -CGGCCGCUGGUGCGG------CGACC---UCUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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