miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23063 5' -60 NC_005178.1 + 28073 0.67 0.337047
Target:  5'- gGCCaggauGGCGACC-CGCCaGCUaGGGGcGUCu -3'
miRNA:   3'- -CGG-----CCGCUGGuGCGG-CGA-CCUC-UAGu -5'
23063 5' -60 NC_005178.1 + 28190 0.68 0.29833
Target:  5'- gGCCGGCGcCCugGCgacUGCUGGcGG-CAc -3'
miRNA:   3'- -CGGCCGCuGGugCG---GCGACCuCUaGU- -5'
23063 5' -60 NC_005178.1 + 22674 0.68 0.29833
Target:  5'- aGCCcagGGCGACCuCGCCcaggccgaGCUGGAucgccgGGUCGc -3'
miRNA:   3'- -CGG---CCGCUGGuGCGG--------CGACCU------CUAGU- -5'
23063 5' -60 NC_005178.1 + 9575 0.67 0.305789
Target:  5'- uGCCcuGCG-CCGCGCugCGCUGGGcGGUCGc -3'
miRNA:   3'- -CGGc-CGCuGGUGCG--GCGACCU-CUAGU- -5'
23063 5' -60 NC_005178.1 + 24586 0.67 0.31339
Target:  5'- aCCGGCGACCugGgCCGCUucGGccg-CAu -3'
miRNA:   3'- cGGCCGCUGGugC-GGCGA--CCucuaGU- -5'
23063 5' -60 NC_005178.1 + 4948 0.67 0.321133
Target:  5'- cGCCaGCGGCCGC-CCGCU---GAUCAu -3'
miRNA:   3'- -CGGcCGCUGGUGcGGCGAccuCUAGU- -5'
23063 5' -60 NC_005178.1 + 11997 0.67 0.321133
Target:  5'- gGCUGGU-ACCGgGCUGCUGccGAGGUCu -3'
miRNA:   3'- -CGGCCGcUGGUgCGGCGAC--CUCUAGu -5'
23063 5' -60 NC_005178.1 + 28293 0.67 0.321133
Target:  5'- aCCGGCGcugcgggagcuGCCgGgGCCGCUGGAGuggCu -3'
miRNA:   3'- cGGCCGC-----------UGG-UgCGGCGACCUCua-Gu -5'
23063 5' -60 NC_005178.1 + 30820 0.67 0.321915
Target:  5'- gGCCGGCGuCUACGCgGCgcaucagccgguagaGGuGAUCc -3'
miRNA:   3'- -CGGCCGCuGGUGCGgCGa--------------CCuCUAGu -5'
23063 5' -60 NC_005178.1 + 11101 0.68 0.29833
Target:  5'- gGCCGGCagcGCCGCGCUGCUGa------ -3'
miRNA:   3'- -CGGCCGc--UGGUGCGGCGACcucuagu -5'
23063 5' -60 NC_005178.1 + 10252 0.68 0.29612
Target:  5'- gGCCGGacgcaucggccugcCGGCCACGCUGgUGGuaGUCGa -3'
miRNA:   3'- -CGGCC--------------GCUGGUGCGGCgACCucUAGU- -5'
23063 5' -60 NC_005178.1 + 12299 0.68 0.293923
Target:  5'- cGCUGGUGAUCGCGCUgccugccgcuuuccuGCUGGc-GUCAu -3'
miRNA:   3'- -CGGCCGCUGGUGCGG---------------CGACCucUAGU- -5'
23063 5' -60 NC_005178.1 + 36140 0.72 0.146842
Target:  5'- aGgUGGCGaacgagGCCACGCCuGCUGGccAGGUCAa -3'
miRNA:   3'- -CgGCCGC------UGGUGCGG-CGACC--UCUAGU- -5'
23063 5' -60 NC_005178.1 + 17348 0.71 0.172884
Target:  5'- aGCuCGGCaGcCCGCGCCGgCUGGAaacGAUCu -3'
miRNA:   3'- -CG-GCCG-CuGGUGCGGC-GACCU---CUAGu -5'
23063 5' -60 NC_005178.1 + 32832 0.7 0.202969
Target:  5'- cGuuGGCGACCAuCGCUGCa--AGGUCAa -3'
miRNA:   3'- -CggCCGCUGGU-GCGGCGaccUCUAGU- -5'
23063 5' -60 NC_005178.1 + 31321 0.69 0.25005
Target:  5'- cGCCuGGCG-CCGCGCCG--GGAGuUCGa -3'
miRNA:   3'- -CGG-CCGCuGGUGCGGCgaCCUCuAGU- -5'
23063 5' -60 NC_005178.1 + 12653 0.69 0.256532
Target:  5'- gGCuCGGCGGCCG-GCgCGCUGGcGGGUg- -3'
miRNA:   3'- -CG-GCCGCUGGUgCG-GCGACC-UCUAgu -5'
23063 5' -60 NC_005178.1 + 31769 0.69 0.256532
Target:  5'- uGCCGGCGACgACcuacagggggcgGCCaguGCUGGAGcagCAc -3'
miRNA:   3'- -CGGCCGCUGgUG------------CGG---CGACCUCua-GU- -5'
23063 5' -60 NC_005178.1 + 31593 0.68 0.279599
Target:  5'- cGCCGGCcugGACCugGuCCGCcccguccaggccaccUGGGGAa-- -3'
miRNA:   3'- -CGGCCG---CUGGugC-GGCG---------------ACCUCUagu -5'
23063 5' -60 NC_005178.1 + 26000 0.68 0.283837
Target:  5'- cGUCGGCG-CgACGUuucaggCGCUGGGcGAUCAg -3'
miRNA:   3'- -CGGCCGCuGgUGCG------GCGACCU-CUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.