miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23063 5' -60 NC_005178.1 + 32971 1.1 0.000198
Target:  5'- aGCCGGCGACCACGCCGCUGGAGAUCAc -3'
miRNA:   3'- -CGGCCGCUGGUGCGGCGACCUCUAGU- -5'
23063 5' -60 NC_005178.1 + 30863 0.66 0.353526
Target:  5'- cGCCGGCccaggucgaGGCCGCGaCCGCUGccaggcGGAUg- -3'
miRNA:   3'- -CGGCCG---------CUGGUGC-GGCGACc-----UCUAgu -5'
23063 5' -60 NC_005178.1 + 25098 0.66 0.370568
Target:  5'- gGCaGGCGAagacucgaccCCACGuuGUUGGAGggCu -3'
miRNA:   3'- -CGgCCGCU----------GGUGCggCGACCUCuaGu -5'
23063 5' -60 NC_005178.1 + 6551 0.66 0.388161
Target:  5'- cGgCGGUGACCugGCCGaaCUGGc--UCAc -3'
miRNA:   3'- -CgGCCGCUGGugCGGC--GACCucuAGU- -5'
23063 5' -60 NC_005178.1 + 9116 0.69 0.235657
Target:  5'- gGCCGGUGACCGCGagCGC-GGcgcggcauugcuccAGGUCGa -3'
miRNA:   3'- -CGGCCGCUGGUGCg-GCGaCC--------------UCUAGU- -5'
23063 5' -60 NC_005178.1 + 33979 0.69 0.237494
Target:  5'- aGCCGGC-ACCAgGCCGCc-GAGcAUCGc -3'
miRNA:   3'- -CGGCCGcUGGUgCGGCGacCUC-UAGU- -5'
23063 5' -60 NC_005178.1 + 15243 0.69 0.256532
Target:  5'- gGCCGuuGGCCAugUGCgGCUGGAGGcuuUCGa -3'
miRNA:   3'- -CGGCcgCUGGU--GCGgCGACCUCU---AGU- -5'
23063 5' -60 NC_005178.1 + 5392 0.68 0.26315
Target:  5'- aCCGGUGuacagcuCCAgGUucaggCGCUGGAGGUCGg -3'
miRNA:   3'- cGGCCGCu------GGUgCG-----GCGACCUCUAGU- -5'
23063 5' -60 NC_005178.1 + 36398 0.67 0.305789
Target:  5'- uGCCGGCGAau-CGuCCGCUGucGGGcAUCAg -3'
miRNA:   3'- -CGGCCGCUgguGC-GGCGAC--CUC-UAGU- -5'
23063 5' -60 NC_005178.1 + 6822 0.67 0.337047
Target:  5'- gGCCGaG-GGCCAggaagaUGCCGaUGGGGAUCAg -3'
miRNA:   3'- -CGGC-CgCUGGU------GCGGCgACCUCUAGU- -5'
23063 5' -60 NC_005178.1 + 9718 0.67 0.31339
Target:  5'- gGCuCGGCGaaGCCACcgGCCGCgc-AGAUCAg -3'
miRNA:   3'- -CG-GCCGC--UGGUG--CGGCGaccUCUAGU- -5'
23063 5' -60 NC_005178.1 + 9593 0.68 0.283127
Target:  5'- cGuuGGCGuucCCGCGCCaggcggcGCUGGcGGUCu -3'
miRNA:   3'- -CggCCGCu--GGUGCGG-------CGACCuCUAGu -5'
23063 5' -60 NC_005178.1 + 7175 0.73 0.124425
Target:  5'- -gCGGCG-CCG-GCCGCUGGAGGUa- -3'
miRNA:   3'- cgGCCGCuGGUgCGGCGACCUCUAgu -5'
23063 5' -60 NC_005178.1 + 21939 0.67 0.329019
Target:  5'- cGCCGGgcCGACCAggaGCaCGUUGGGGGa-- -3'
miRNA:   3'- -CGGCC--GCUGGUg--CG-GCGACCUCUagu -5'
23063 5' -60 NC_005178.1 + 20618 0.7 0.197657
Target:  5'- cGCC-GCGACCugGCC-CUGGAGc--- -3'
miRNA:   3'- -CGGcCGCUGGugCGGcGACCUCuagu -5'
23063 5' -60 NC_005178.1 + 23511 0.68 0.269906
Target:  5'- cGCCgGGCGcCCugGCCGUcgcccUGGGcGUCGg -3'
miRNA:   3'- -CGG-CCGCuGGugCGGCG-----ACCUcUAGU- -5'
23063 5' -60 NC_005178.1 + 33643 0.67 0.334623
Target:  5'- cGCCGGUcgcGACCAgcacgucggcucgaUGCCGUccUGGAGAa-- -3'
miRNA:   3'- -CGGCCG---CUGGU--------------GCGGCG--ACCUCUagu -5'
23063 5' -60 NC_005178.1 + 28287 0.66 0.353526
Target:  5'- gGCCuggauaGCGGCgGCGCCGCUcaGGAGcgUg -3'
miRNA:   3'- -CGGc-----CGCUGgUGCGGCGA--CCUCuaGu -5'
23063 5' -60 NC_005178.1 + 2857 0.7 0.208405
Target:  5'- aUCGGCGACCA-GuuGCUGGcGGUUg -3'
miRNA:   3'- cGGCCGCUGGUgCggCGACCuCUAGu -5'
23063 5' -60 NC_005178.1 + 29772 0.69 0.243705
Target:  5'- uGCCGGagcGCCACGCUGuCUGGaAGA-CAa -3'
miRNA:   3'- -CGGCCgc-UGGUGCGGC-GACC-UCUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.