miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23063 5' -60 NC_005178.1 + 2857 0.7 0.208405
Target:  5'- aUCGGCGACCA-GuuGCUGGcGGUUg -3'
miRNA:   3'- cGGCCGCUGGUgCggCGACCuCUAGu -5'
23063 5' -60 NC_005178.1 + 3771 0.66 0.387269
Target:  5'- cGCCaagGGCGgcACCAUGCCGCUGaugucuuGGGAa-- -3'
miRNA:   3'- -CGG---CCGC--UGGUGCGGCGAC-------CUCUagu -5'
23063 5' -60 NC_005178.1 + 4948 0.67 0.321133
Target:  5'- cGCCaGCGGCCGC-CCGCU---GAUCAu -3'
miRNA:   3'- -CGGcCGCUGGUGcGGCGAccuCUAGU- -5'
23063 5' -60 NC_005178.1 + 5392 0.68 0.26315
Target:  5'- aCCGGUGuacagcuCCAgGUucaggCGCUGGAGGUCGg -3'
miRNA:   3'- cGGCCGCu------GGUgCG-----GCGACCUCUAGU- -5'
23063 5' -60 NC_005178.1 + 5550 0.66 0.361977
Target:  5'- cGCCugGGCGGCUACGUCGa-GGcGAUCc -3'
miRNA:   3'- -CGG--CCGCUGGUGCGGCgaCCuCUAGu -5'
23063 5' -60 NC_005178.1 + 6551 0.66 0.388161
Target:  5'- cGgCGGUGACCugGCCGaaCUGGc--UCAc -3'
miRNA:   3'- -CgGCCGCUGGugCGGC--GACCucuAGU- -5'
23063 5' -60 NC_005178.1 + 6822 0.67 0.337047
Target:  5'- gGCCGaG-GGCCAggaagaUGCCGaUGGGGAUCAg -3'
miRNA:   3'- -CGGC-CgCUGGU------GCGGCgACCUCUAGU- -5'
23063 5' -60 NC_005178.1 + 7127 0.66 0.370568
Target:  5'- gGCCGGCGccgcugaacaACCccgucgcgauGCGCUGCUGGAa---- -3'
miRNA:   3'- -CGGCCGC----------UGG----------UGCGGCGACCUcuagu -5'
23063 5' -60 NC_005178.1 + 7175 0.73 0.124425
Target:  5'- -gCGGCG-CCG-GCCGCUGGAGGUa- -3'
miRNA:   3'- cgGCCGCuGGUgCGGCGACCUCUAgu -5'
23063 5' -60 NC_005178.1 + 9116 0.69 0.235657
Target:  5'- gGCCGGUGACCGCGagCGC-GGcgcggcauugcuccAGGUCGa -3'
miRNA:   3'- -CGGCCGCUGGUGCg-GCGaCC--------------UCUAGU- -5'
23063 5' -60 NC_005178.1 + 9575 0.67 0.305789
Target:  5'- uGCCcuGCG-CCGCGCugCGCUGGGcGGUCGc -3'
miRNA:   3'- -CGGc-CGCuGGUGCG--GCGACCU-CUAGU- -5'
23063 5' -60 NC_005178.1 + 9593 0.68 0.283127
Target:  5'- cGuuGGCGuucCCGCGCCaggcggcGCUGGcGGUCu -3'
miRNA:   3'- -CggCCGCu--GGUGCGG-------CGACCuCUAGu -5'
23063 5' -60 NC_005178.1 + 9662 0.66 0.397162
Target:  5'- gGCCGGUGGCUuCGCCGagccggccgaGGcGGUCAc -3'
miRNA:   3'- -CGGCCGCUGGuGCGGCga--------CCuCUAGU- -5'
23063 5' -60 NC_005178.1 + 9718 0.67 0.31339
Target:  5'- gGCuCGGCGaaGCCACcgGCCGCgc-AGAUCAg -3'
miRNA:   3'- -CG-GCCGC--UGGUG--CGGCGaccUCUAGU- -5'
23063 5' -60 NC_005178.1 + 10252 0.68 0.29612
Target:  5'- gGCCGGacgcaucggccugcCGGCCACGCUGgUGGuaGUCGa -3'
miRNA:   3'- -CGGCC--------------GCUGGUGCGGCgACCucUAGU- -5'
23063 5' -60 NC_005178.1 + 11101 0.68 0.29833
Target:  5'- gGCCGGCagcGCCGCGCUGCUGa------ -3'
miRNA:   3'- -CGGCCGc--UGGUGCGGCGACcucuagu -5'
23063 5' -60 NC_005178.1 + 11997 0.67 0.321133
Target:  5'- gGCUGGU-ACCGgGCUGCUGccGAGGUCu -3'
miRNA:   3'- -CGGCCGcUGGUgCGGCGAC--CUCUAGu -5'
23063 5' -60 NC_005178.1 + 12299 0.68 0.293923
Target:  5'- cGCUGGUGAUCGCGCUgccugccgcuuuccuGCUGGc-GUCAu -3'
miRNA:   3'- -CGGCCGCUGGUGCGG---------------CGACCucUAGU- -5'
23063 5' -60 NC_005178.1 + 12653 0.69 0.256532
Target:  5'- gGCuCGGCGGCCG-GCgCGCUGGcGGGUg- -3'
miRNA:   3'- -CG-GCCGCUGGUgCG-GCGACC-UCUAgu -5'
23063 5' -60 NC_005178.1 + 15243 0.69 0.256532
Target:  5'- gGCCGuuGGCCAugUGCgGCUGGAGGcuuUCGa -3'
miRNA:   3'- -CGGCcgCUGGU--GCGgCGACCUCU---AGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.