Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23065 | 3' | -62.3 | NC_005178.1 | + | 37248 | 0.7 | 0.149201 |
Target: 5'- -uGGCGUCaaacucgGCCuCCAGGCGCaGCGGGu -3' miRNA: 3'- gcUCGUAG-------CGGcGGUCCGCGcCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 36105 | 0.67 | 0.228078 |
Target: 5'- gGAGUAcaUGCCGcCCAGGUuggGCuGGCGGGu -3' miRNA: 3'- gCUCGUa-GCGGC-GGUCCG---CG-CCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 33963 | 1.1 | 0.000111 |
Target: 5'- cCGAGCAUCGCCGCCAGGCGCGGCAGGa -3' miRNA: 3'- -GCUCGUAGCGGCGGUCCGCGCCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 32891 | 0.69 | 0.162161 |
Target: 5'- aGAGCAUCaGCgGCUGGGUgaucuccaGCGGCGuGGu -3' miRNA: 3'- gCUCGUAG-CGgCGGUCCG--------CGCCGU-CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 32883 | 0.66 | 0.292421 |
Target: 5'- gCGAugGUCGCCaacgacuGCCgugcAGGUGCGGCAGu -3' miRNA: 3'- -GCUcgUAGCGG-------CGG----UCCGCGCCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 31374 | 0.66 | 0.299655 |
Target: 5'- -cGGCG-CGgCGCCAGGCGCauagcccGGCGcuGGg -3' miRNA: 3'- gcUCGUaGCgGCGGUCCGCG-------CCGU--CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 29412 | 0.67 | 0.228078 |
Target: 5'- --cGCgAUC-CCGCCGGGCGCuGGCucGGu -3' miRNA: 3'- gcuCG-UAGcGGCGGUCCGCG-CCGu-CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 29161 | 0.7 | 0.145225 |
Target: 5'- -cAGUAgUCGCCGCCAGGCG-GGauugcucCAGGa -3' miRNA: 3'- gcUCGU-AGCGGCGGUCCGCgCC-------GUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 29043 | 0.69 | 0.175659 |
Target: 5'- -cGGUGcCGCCcagGCCAGGgGCGcGCAGGg -3' miRNA: 3'- gcUCGUaGCGG---CGGUCCgCGC-CGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 28666 | 0.73 | 0.081582 |
Target: 5'- uGAGCggCGCCcauGCuUGGGCGUGGUAGGg -3' miRNA: 3'- gCUCGuaGCGG---CG-GUCCGCGCCGUCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 28621 | 0.69 | 0.175659 |
Target: 5'- -cGGCGaCGCCcCCGguGGCGCGGCGGa -3' miRNA: 3'- gcUCGUaGCGGcGGU--CCGCGCCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 28261 | 0.71 | 0.13063 |
Target: 5'- gGAGCGU-GCCGCCagcagucgccaGGGCGCcGGCcgAGGc -3' miRNA: 3'- gCUCGUAgCGGCGG-----------UCCGCG-CCG--UCC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 27293 | 0.7 | 0.145618 |
Target: 5'- cCGAGCAgaaGCU-CCAGGCGCaGCAGc -3' miRNA: 3'- -GCUCGUag-CGGcGGUCCGCGcCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 27164 | 0.67 | 0.240035 |
Target: 5'- uCGGGUua-GCCGCCuGGauCGCGGCAa- -3' miRNA: 3'- -GCUCGuagCGGCGGuCC--GCGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 26784 | 0.68 | 0.194696 |
Target: 5'- cCGAGCAuuUCGUC-CCAGGCGCccuuggccaccccGGCAacGGu -3' miRNA: 3'- -GCUCGU--AGCGGcGGUCCGCG-------------CCGU--CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 26369 | 0.71 | 0.127111 |
Target: 5'- gCGAGUGaCGCCGCCAuGGCGgacaguugccCGGCGGu -3' miRNA: 3'- -GCUCGUaGCGGCGGU-CCGC----------GCCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 26185 | 0.67 | 0.258945 |
Target: 5'- -cGGCgGUgGCCGCUgcGGGCGUGGCGcuGGc -3' miRNA: 3'- gcUCG-UAgCGGCGG--UCCGCGCCGU--CC- -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 25857 | 0.68 | 0.205677 |
Target: 5'- -cGGCAuuUCGgcaggucaguaCCGCCAGGCcauGCGGCAGu -3' miRNA: 3'- gcUCGU--AGC-----------GGCGGUCCG---CGCCGUCc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 25607 | 0.68 | 0.200382 |
Target: 5'- cCGAGCAacgaGCgGCCgAGGCuGCGGCGa- -3' miRNA: 3'- -GCUCGUag--CGgCGG-UCCG-CGCCGUcc -5' |
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23065 | 3' | -62.3 | NC_005178.1 | + | 23967 | 0.68 | 0.211093 |
Target: 5'- cCGAGaa-CGCCGUugacgaUAGGCGCGGCGu- -3' miRNA: 3'- -GCUCguaGCGGCG------GUCCGCGCCGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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