miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23065 3' -62.3 NC_005178.1 + 5265 0.67 0.228078
Target:  5'- gGAGCAguuggccgagGCCGCCAccguucagggccGGCGCGaGCuGGa -3'
miRNA:   3'- gCUCGUag--------CGGCGGU------------CCGCGC-CGuCC- -5'
23065 3' -62.3 NC_005178.1 + 14663 0.68 0.222291
Target:  5'- gGAGCG-CGCCGCCGccauggaggacGGCGCgaucaucugcuGGCcGGa -3'
miRNA:   3'- gCUCGUaGCGGCGGU-----------CCGCG-----------CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 11878 0.68 0.222291
Target:  5'- cCGAGCAgaUCGC--CCAGGCcguGCGGgAGGu -3'
miRNA:   3'- -GCUCGU--AGCGgcGGUCCG---CGCCgUCC- -5'
23065 3' -62.3 NC_005178.1 + 9521 0.68 0.21663
Target:  5'- aGAccGCcagCGCCGCCuGGCGCGGgAa- -3'
miRNA:   3'- gCU--CGua-GCGGCGGuCCGCGCCgUcc -5'
23065 3' -62.3 NC_005178.1 + 12932 0.68 0.21663
Target:  5'- gGAGgaCGUgGCgCGCCAGGUGCuGGCcGGc -3'
miRNA:   3'- gCUC--GUAgCG-GCGGUCCGCG-CCGuCC- -5'
23065 3' -62.3 NC_005178.1 + 23967 0.68 0.211093
Target:  5'- cCGAGaa-CGCCGUugacgaUAGGCGCGGCGu- -3'
miRNA:   3'- -GCUCguaGCGGCG------GUCCGCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 25857 0.68 0.205677
Target:  5'- -cGGCAuuUCGgcaggucaguaCCGCCAGGCcauGCGGCAGu -3'
miRNA:   3'- gcUCGU--AGC-----------GGCGGUCCG---CGCCGUCc -5'
23065 3' -62.3 NC_005178.1 + 25607 0.68 0.200382
Target:  5'- cCGAGCAacgaGCgGCCgAGGCuGCGGCGa- -3'
miRNA:   3'- -GCUCGUag--CGgCGG-UCCG-CGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 8872 0.68 0.200382
Target:  5'- cCGGGCGacuuucUUGCCGaCCuGGUGCGGCucagcGGu -3'
miRNA:   3'- -GCUCGU------AGCGGC-GGuCCGCGCCGu----CC- -5'
23065 3' -62.3 NC_005178.1 + 20581 0.68 0.200382
Target:  5'- aCGGGCGcccacuUCGCCGggucgggguuaCCGGGgGCGGCGa- -3'
miRNA:   3'- -GCUCGU------AGCGGC-----------GGUCCgCGCCGUcc -5'
23065 3' -62.3 NC_005178.1 + 2863 0.68 0.200382
Target:  5'- gCGGGCAUCGgCGaCCAGuuGCuGGCGGu -3'
miRNA:   3'- -GCUCGUAGCgGC-GGUCcgCG-CCGUCc -5'
23065 3' -62.3 NC_005178.1 + 26784 0.68 0.194696
Target:  5'- cCGAGCAuuUCGUC-CCAGGCGCccuuggccaccccGGCAacGGu -3'
miRNA:   3'- -GCUCGU--AGCGGcGGUCCGCG-------------CCGU--CC- -5'
23065 3' -62.3 NC_005178.1 + 4569 0.69 0.188654
Target:  5'- gGAGCGUUGCCGCUcGGCcagcucgcaccacuGCcgguagcgcugGGCGGGa -3'
miRNA:   3'- gCUCGUAGCGGCGGuCCG--------------CG-----------CCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 22259 0.69 0.185206
Target:  5'- -aAGC--CGaCCGCCAGGCuggcccgccagGCGGCGGGc -3'
miRNA:   3'- gcUCGuaGC-GGCGGUCCG-----------CGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 17926 0.69 0.185206
Target:  5'- gGAGCAcguccuggaccUCGCCG--AGG-GCGGCAGGc -3'
miRNA:   3'- gCUCGU-----------AGCGGCggUCCgCGCCGUCC- -5'
23065 3' -62.3 NC_005178.1 + 10313 0.69 0.180376
Target:  5'- -uGGCGgauaGCCgaggGCCGGGCGCGGaGGGg -3'
miRNA:   3'- gcUCGUag--CGG----CGGUCCGCGCCgUCC- -5'
23065 3' -62.3 NC_005178.1 + 12438 0.69 0.180376
Target:  5'- uGAGcCAagGCCGCCGGuaGUGGCcuGGGc -3'
miRNA:   3'- gCUC-GUagCGGCGGUCcgCGCCG--UCC- -5'
23065 3' -62.3 NC_005178.1 + 28621 0.69 0.175659
Target:  5'- -cGGCGaCGCCcCCGguGGCGCGGCGGa -3'
miRNA:   3'- gcUCGUaGCGGcGGU--CCGCGCCGUCc -5'
23065 3' -62.3 NC_005178.1 + 29043 0.69 0.175659
Target:  5'- -cGGUGcCGCCcagGCCAGGgGCGcGCAGGg -3'
miRNA:   3'- gcUCGUaGCGG---CGGUCCgCGC-CGUCC- -5'
23065 3' -62.3 NC_005178.1 + 18157 0.69 0.175659
Target:  5'- -uGGCGg-GCUggGCCAGGCGCugcGGCAGGu -3'
miRNA:   3'- gcUCGUagCGG--CGGUCCGCG---CCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.