miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23072 5' -57.3 NC_005178.1 + 35773 0.66 0.52051
Target:  5'- --cUUGA-GUUCaCGUgccuGCCGGCUCGCu -3'
miRNA:   3'- agaAGCUaCAAG-GCGu---CGGCCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 16321 0.66 0.499375
Target:  5'- ---cCGAUGa--UGCGGCCGGCCgGg -3'
miRNA:   3'- agaaGCUACaagGCGUCGGCCGGgCg -5'
23072 5' -57.3 NC_005178.1 + 3091 0.66 0.499375
Target:  5'- aUCUggUCGAUGUauuUCaCGauaAGCUGGCUCGg -3'
miRNA:   3'- -AGA--AGCUACA---AG-GCg--UCGGCCGGGCg -5'
23072 5' -57.3 NC_005178.1 + 27225 0.67 0.468416
Target:  5'- gCUUCGccccUCCGCGcCCGGCCCu- -3'
miRNA:   3'- aGAAGCuacaAGGCGUcGGCCGGGcg -5'
23072 5' -57.3 NC_005178.1 + 25303 0.67 0.458316
Target:  5'- ---cCGAguaguuUGUUggUCGCuGUCGGCCCGCu -3'
miRNA:   3'- agaaGCU------ACAA--GGCGuCGGCCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 25756 0.67 0.458316
Target:  5'- ----gGGUGUccuggUCCauguGCAgGCCGGCCUGCg -3'
miRNA:   3'- agaagCUACA-----AGG----CGU-CGGCCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 14295 0.67 0.45631
Target:  5'- gUCUUCGGcuccggcaagcgGaUgCGCGGCCuucgacacGGCCCGCa -3'
miRNA:   3'- -AGAAGCUa-----------CaAgGCGUCGG--------CCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 12629 0.67 0.455309
Target:  5'- --aUCGAgcguaaggccgugcUGUacggcUCgGCGGCCGGCgCGCu -3'
miRNA:   3'- agaAGCU--------------ACA-----AGgCGUCGGCCGgGCG- -5'
23072 5' -57.3 NC_005178.1 + 6902 0.67 0.41913
Target:  5'- gUCUUCGuccagcUGcucgCCGCugAGgUGGCCCGCa -3'
miRNA:   3'- -AGAAGCu-----ACaa--GGCG--UCgGCCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 34146 0.67 0.41913
Target:  5'- ---cCGGgacUUCCGgGGaCUGGCCCGCa -3'
miRNA:   3'- agaaGCUac-AAGGCgUC-GGCCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 32090 0.67 0.41913
Target:  5'- ---aCGGUGaacucUUCGCGGuuGGCCCGg -3'
miRNA:   3'- agaaGCUACa----AGGCGUCggCCGGGCg -5'
23072 5' -57.3 NC_005178.1 + 11878 0.68 0.399387
Target:  5'- --gUCGAUGg-CCGCgagcaguuugcccAGCuCGGCCUGCu -3'
miRNA:   3'- agaAGCUACaaGGCG-------------UCG-GCCGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 8820 0.68 0.39111
Target:  5'- ---aCGAUGUaauggucgCCGCccuuGCCGGCCCa- -3'
miRNA:   3'- agaaGCUACAa-------GGCGu---CGGCCGGGcg -5'
23072 5' -57.3 NC_005178.1 + 11926 0.68 0.382045
Target:  5'- cUCggCGGUGgcuuucgCCGCAGCCucGG-CCGCu -3'
miRNA:   3'- -AGaaGCUACaa-----GGCGUCGG--CCgGGCG- -5'
23072 5' -57.3 NC_005178.1 + 7551 0.68 0.381146
Target:  5'- cUUUCGAcgaauacggguUGUUCUGCAccgaguuGCCGGgCUGCg -3'
miRNA:   3'- aGAAGCU-----------ACAAGGCGU-------CGGCCgGGCG- -5'
23072 5' -57.3 NC_005178.1 + 9035 0.68 0.364341
Target:  5'- gCUUCGAccUGgagcaaugCCGC-GCCGcGCUCGCg -3'
miRNA:   3'- aGAAGCU--ACaa------GGCGuCGGC-CGGGCG- -5'
23072 5' -57.3 NC_005178.1 + 6732 0.68 0.364341
Target:  5'- ---cUGAUGcgCCGCGuagacGCCGGCCCa- -3'
miRNA:   3'- agaaGCUACaaGGCGU-----CGGCCGGGcg -5'
23072 5' -57.3 NC_005178.1 + 33914 0.69 0.347212
Target:  5'- gCggCGAUGcUCgGCGGCCGGUgCCGg -3'
miRNA:   3'- aGaaGCUACaAGgCGUCGGCCG-GGCg -5'
23072 5' -57.3 NC_005178.1 + 2173 0.69 0.347212
Target:  5'- cUCgcUGGUGUUCgucaGCAGCCGGgCCUGg -3'
miRNA:   3'- -AGaaGCUACAAGg---CGUCGGCC-GGGCg -5'
23072 5' -57.3 NC_005178.1 + 28319 0.69 0.322615
Target:  5'- aUCUUCGAUGcUUCggagucgugcaGCGGCgGGCCUuGCa -3'
miRNA:   3'- -AGAAGCUAC-AAGg----------CGUCGgCCGGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.