miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23074 5' -50.4 NC_005178.1 + 2354 1.12 0.001106
Target:  5'- aAGCACAGCUUGACGCUAUACAUCGCCc -3'
miRNA:   3'- -UCGUGUCGAACUGCGAUAUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 17140 0.83 0.119828
Target:  5'- cGCGCAGCUUGGCcagGUugGUCGCCu -3'
miRNA:   3'- uCGUGUCGAACUGcgaUAugUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 18473 0.81 0.147663
Target:  5'- cGCAUAGCcuUUGAUGCUGUcuGCGUCGUCg -3'
miRNA:   3'- uCGUGUCG--AACUGCGAUA--UGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 27979 0.8 0.186589
Target:  5'- cAGCGCAGCgcGGCGCaggGCAUCGCg -3'
miRNA:   3'- -UCGUGUCGaaCUGCGauaUGUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 17597 0.76 0.299731
Target:  5'- cGUugACGGCggc-CGCUGUGCGUCGCCg -3'
miRNA:   3'- uCG--UGUCGaacuGCGAUAUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 20074 0.76 0.299731
Target:  5'- uGGCugGGCcgagUGACGCUGUcCAUgacCGCCa -3'
miRNA:   3'- -UCGugUCGa---ACUGCGAUAuGUA---GCGG- -5'
23074 5' -50.4 NC_005178.1 + 19459 0.76 0.307817
Target:  5'- gGGCugGGCcaGGCGCUGcgGCAgguUCGCCa -3'
miRNA:   3'- -UCGugUCGaaCUGCGAUa-UGU---AGCGG- -5'
23074 5' -50.4 NC_005178.1 + 7749 0.74 0.427808
Target:  5'- cGCGCAGCUUGGCGagcaa-GUCgGCCg -3'
miRNA:   3'- uCGUGUCGAACUGCgauaugUAG-CGG- -5'
23074 5' -50.4 NC_005178.1 + 9754 0.73 0.438127
Target:  5'- cAGCGCcuugAGCUUGuCGUUGUAC-UCGUCg -3'
miRNA:   3'- -UCGUG----UCGAACuGCGAUAUGuAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 27209 0.72 0.502837
Target:  5'- cAGCGCAGCccGGCGC---GCuUCGCCc -3'
miRNA:   3'- -UCGUGUCGaaCUGCGauaUGuAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 29905 0.71 0.559753
Target:  5'- gGGC-CAGCUc-GCGCUGgAgGUCGCCg -3'
miRNA:   3'- -UCGuGUCGAacUGCGAUaUgUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 29184 0.71 0.583047
Target:  5'- uGCACAGCUguUGcGCGCgguUGCGU-GCCa -3'
miRNA:   3'- uCGUGUCGA--AC-UGCGau-AUGUAgCGG- -5'
23074 5' -50.4 NC_005178.1 + 11762 0.7 0.641912
Target:  5'- uGCuccuGgAGCUUGGCGUUGUAgGUCGUa -3'
miRNA:   3'- uCG----UgUCGAACUGCGAUAUgUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 26180 0.7 0.641912
Target:  5'- cGGCGCGGCggUGGcCGCUGcggGCGUgGCg -3'
miRNA:   3'- -UCGUGUCGa-ACU-GCGAUa--UGUAgCGg -5'
23074 5' -50.4 NC_005178.1 + 30516 0.7 0.641912
Target:  5'- cAGCGCGGCcaggacacGACGCUcgACGcggaUCGUCg -3'
miRNA:   3'- -UCGUGUCGaa------CUGCGAuaUGU----AGCGG- -5'
23074 5' -50.4 NC_005178.1 + 23413 0.7 0.653702
Target:  5'- uGgGCAGCcgugcUGACGUUGUACuaCGCCg -3'
miRNA:   3'- uCgUGUCGa----ACUGCGAUAUGuaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 20961 0.69 0.6772
Target:  5'- cGCcCAGCUUGACcagggGCgguaaugACGUUGCCa -3'
miRNA:   3'- uCGuGUCGAACUG-----CGaua----UGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 36660 0.69 0.6772
Target:  5'- cGUAUcGCga-GCGCUGUuCAUCGCCg -3'
miRNA:   3'- uCGUGuCGaacUGCGAUAuGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 35040 0.69 0.6772
Target:  5'- cGCgucgGCAGCUcUGGCGCguucGUugAUCGCg -3'
miRNA:   3'- uCG----UGUCGA-ACUGCGa---UAugUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 31577 0.69 0.68188
Target:  5'- cAGCGCcccgcgaacgacuccGGgUUGugGCUgGUACuUCGCCg -3'
miRNA:   3'- -UCGUG---------------UCgAACugCGA-UAUGuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.