Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 6132 | 0.67 | 0.820184 |
Target: 5'- uGCACAGCaaGGCGgUAg----CGCCg -3' miRNA: 3'- uCGUGUCGaaCUGCgAUauguaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 36660 | 0.69 | 0.6772 |
Target: 5'- cGUAUcGCga-GCGCUGUuCAUCGCCg -3' miRNA: 3'- uCGUGuCGaacUGCGAUAuGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 35040 | 0.69 | 0.6772 |
Target: 5'- cGCgucgGCAGCUcUGGCGCguucGUugAUCGCg -3' miRNA: 3'- uCG----UGUCGA-ACUGCGa---UAugUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 9725 | 0.69 | 0.688883 |
Target: 5'- uGCugAGCgUGACGCgucACGUuuUGCCg -3' miRNA: 3'- uCGugUCGaACUGCGauaUGUA--GCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 7346 | 0.68 | 0.768122 |
Target: 5'- gAGCcgACAGaggGGCGCgugacCAUCGCCg -3' miRNA: 3'- -UCG--UGUCgaaCUGCGauau-GUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30297 | 0.68 | 0.768122 |
Target: 5'- cGGCuagACAGCcucGACGgUAgccCAUCGCCg -3' miRNA: 3'- -UCG---UGUCGaa-CUGCgAUau-GUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 9580 | 0.67 | 0.778911 |
Target: 5'- uGCGCcGCgcuGCGCUGgGCGgUCGCCg -3' miRNA: 3'- uCGUGuCGaacUGCGAUaUGU-AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 2930 | 0.67 | 0.778911 |
Target: 5'- gAGcCGCAGCUgcuCGCUAUGCucaagAUgGCCc -3' miRNA: 3'- -UC-GUGUCGAacuGCGAUAUG-----UAgCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30034 | 0.67 | 0.804066 |
Target: 5'- uAGCGCAGCUcaGcgccgggccauucacGCGCUAUcACcuguUCGCCa -3' miRNA: 3'- -UCGUGUCGAa-C---------------UGCGAUA-UGu---AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 34338 | 0.67 | 0.810175 |
Target: 5'- cAGCAucCGGCUccugcggGACGaCUAUaACGUCGCa -3' miRNA: 3'- -UCGU--GUCGAa------CUGC-GAUA-UGUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 17597 | 0.76 | 0.299731 |
Target: 5'- cGUugACGGCggc-CGCUGUGCGUCGCCg -3' miRNA: 3'- uCG--UGUCGaacuGCGAUAUGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 3857 | 0.66 | 0.829966 |
Target: 5'- cGCacaGCAGCUUGcCGC---GCAUCGUUg -3' miRNA: 3'- uCG---UGUCGAACuGCGauaUGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31372 | 0.66 | 0.848801 |
Target: 5'- gAGCgGCAGCUacuggacaUGACGCUGUuugGCuggggCGCg -3' miRNA: 3'- -UCG-UGUCGA--------ACUGCGAUA---UGua---GCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 34452 | 0.66 | 0.848801 |
Target: 5'- gAGC-CAGCUUauCGUgaaAUACAUCGaCCa -3' miRNA: 3'- -UCGuGUCGAAcuGCGa--UAUGUAGC-GG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31538 | 0.66 | 0.856941 |
Target: 5'- uGCGCGGCgagGACGCcuucaccUAUGaaGUCGUCg -3' miRNA: 3'- uCGUGUCGaa-CUGCG-------AUAUg-UAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 32821 | 0.66 | 0.857832 |
Target: 5'- uGCACGGCagucgUUGGCGac---CAUCGCUg -3' miRNA: 3'- uCGUGUCG-----AACUGCgauauGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 26063 | 0.66 | 0.857832 |
Target: 5'- cGC-CAGCgacGGC-CUGgacgACAUCGCCc -3' miRNA: 3'- uCGuGUCGaa-CUGcGAUa---UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 17914 | 0.66 | 0.866591 |
Target: 5'- uGGCAgGcGUUUGuggacCGCUccACGUCGCCc -3' miRNA: 3'- -UCGUgU-CGAACu----GCGAuaUGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 22803 | 0.66 | 0.866591 |
Target: 5'- cAGUACGGCgaGGCGUc---CAUcCGCCa -3' miRNA: 3'- -UCGUGUCGaaCUGCGauauGUA-GCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31902 | 0.66 | 0.866591 |
Target: 5'- cGC-CGGgaUGGCGCUGccgguCAUCgGCCa -3' miRNA: 3'- uCGuGUCgaACUGCGAUau---GUAG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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