Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 17140 | 0.83 | 0.119828 |
Target: 5'- cGCGCAGCUUGGCcagGUugGUCGCCu -3' miRNA: 3'- uCGUGUCGAACUGcgaUAugUAGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 35822 | 0.67 | 0.820184 |
Target: 5'- cGGCcCAGUUcGGCGagcaGUGCAUCGCg -3' miRNA: 3'- -UCGuGUCGAaCUGCga--UAUGUAGCGg -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 2301 | 0.66 | 0.839509 |
Target: 5'- cGGCGCAGCcgcGCGCgagggugACcgUGCCg -3' miRNA: 3'- -UCGUGUCGaacUGCGaua----UGuaGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 30392 | 0.66 | 0.866591 |
Target: 5'- aGGCGCGGC---ACGCUuuccagcagcGCAUCGCg -3' miRNA: 3'- -UCGUGUCGaacUGCGAua--------UGUAGCGg -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 19459 | 0.76 | 0.307817 |
Target: 5'- gGGCugGGCcaGGCGCUGcgGCAgguUCGCCa -3' miRNA: 3'- -UCGugUCGaaCUGCGAUa-UGU---AGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 7749 | 0.74 | 0.427808 |
Target: 5'- cGCGCAGCUUGGCGagcaa-GUCgGCCg -3' miRNA: 3'- uCGUGUCGAACUGCgauaugUAG-CGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 27209 | 0.72 | 0.502837 |
Target: 5'- cAGCGCAGCccGGCGC---GCuUCGCCc -3' miRNA: 3'- -UCGUGUCGaaCUGCGauaUGuAGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 29905 | 0.71 | 0.559753 |
Target: 5'- gGGC-CAGCUc-GCGCUGgAgGUCGCCg -3' miRNA: 3'- -UCGuGUCGAacUGCGAUaUgUAGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 30516 | 0.7 | 0.641912 |
Target: 5'- cAGCGCGGCcaggacacGACGCUcgACGcggaUCGUCg -3' miRNA: 3'- -UCGUGUCGaa------CUGCGAuaUGU----AGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 13097 | 0.67 | 0.810175 |
Target: 5'- uGUACAGCUcGACGaugaccgGCG-CGCCg -3' miRNA: 3'- uCGUGUCGAaCUGCgaua---UGUaGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 31577 | 0.69 | 0.68188 |
Target: 5'- cAGCGCcccgcgaacgacuccGGgUUGugGCUgGUACuUCGCCg -3' miRNA: 3'- -UCGUG---------------UCgAACugCGA-UAUGuAGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 11762 | 0.7 | 0.641912 |
Target: 5'- uGCuccuGgAGCUUGGCGUUGUAgGUCGUa -3' miRNA: 3'- uCG----UgUCGAACUGCGAUAUgUAGCGg -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 18473 | 0.81 | 0.147663 |
Target: 5'- cGCAUAGCcuUUGAUGCUGUcuGCGUCGUCg -3' miRNA: 3'- uCGUGUCG--AACUGCGAUA--UGUAGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 27543 | 0.69 | 0.685384 |
Target: 5'- cAGCACGGUUUGcCGgUuuugcggcacuuuugGCGUCGCCc -3' miRNA: 3'- -UCGUGUCGAACuGCgAua-------------UGUAGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 27979 | 0.8 | 0.186589 |
Target: 5'- cAGCGCAGCgcGGCGCaggGCAUCGCg -3' miRNA: 3'- -UCGUGUCGaaCUGCGauaUGUAGCGg -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 29184 | 0.71 | 0.583047 |
Target: 5'- uGCACAGCUguUGcGCGCgguUGCGU-GCCa -3' miRNA: 3'- uCGUGUCGA--AC-UGCGau-AUGUAgCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 6253 | 0.68 | 0.757172 |
Target: 5'- cGCAUAGCccGGCGCUGggucacgGCugauUCGCUu -3' miRNA: 3'- uCGUGUCGaaCUGCGAUa------UGu---AGCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 30904 | 0.66 | 0.828999 |
Target: 5'- uGCAgCGGUUUGACGCUcaaggugAUugAUaGCCc -3' miRNA: 3'- uCGU-GUCGAACUGCGA-------UAugUAgCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 20074 | 0.76 | 0.299731 |
Target: 5'- uGGCugGGCcgagUGACGCUGUcCAUgacCGCCa -3' miRNA: 3'- -UCGugUCGa---ACUGCGAUAuGUA---GCGG- -5' |
|||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 9754 | 0.73 | 0.438127 |
Target: 5'- cAGCGCcuugAGCUUGuCGUUGUAC-UCGUCg -3' miRNA: 3'- -UCGUG----UCGAACuGCGAUAUGuAGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home