Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 11762 | 0.7 | 0.641912 |
Target: 5'- uGCuccuGgAGCUUGGCGUUGUAgGUCGUa -3' miRNA: 3'- uCG----UgUCGAACUGCGAUAUgUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 2301 | 0.66 | 0.839509 |
Target: 5'- cGGCGCAGCcgcGCGCgagggugACcgUGCCg -3' miRNA: 3'- -UCGUGUCGaacUGCGaua----UGuaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 13097 | 0.67 | 0.810175 |
Target: 5'- uGUACAGCUcGACGaugaccgGCG-CGCCg -3' miRNA: 3'- uCGUGUCGAaCUGCgaua---UGUaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30516 | 0.7 | 0.641912 |
Target: 5'- cAGCGCGGCcaggacacGACGCUcgACGcggaUCGUCg -3' miRNA: 3'- -UCGUGUCGaa------CUGCGAuaUGU----AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 9725 | 0.69 | 0.688883 |
Target: 5'- uGCugAGCgUGACGCgucACGUuuUGCCg -3' miRNA: 3'- uCGugUCGaACUGCGauaUGUA--GCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 26963 | 0.68 | 0.746076 |
Target: 5'- aGGCGCAGaa-GGCGCgccUGgAUCGCUa -3' miRNA: 3'- -UCGUGUCgaaCUGCGau-AUgUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 26180 | 0.7 | 0.641912 |
Target: 5'- cGGCGCGGCggUGGcCGCUGcggGCGUgGCg -3' miRNA: 3'- -UCGUGUCGa-ACU-GCGAUa--UGUAgCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 26063 | 0.66 | 0.857832 |
Target: 5'- cGC-CAGCgacGGC-CUGgacgACAUCGCCc -3' miRNA: 3'- uCGuGUCGaa-CUGcGAUa---UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 32821 | 0.66 | 0.857832 |
Target: 5'- uGCACGGCagucgUUGGCGac---CAUCGCUg -3' miRNA: 3'- uCGUGUCG-----AACUGCgauauGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31538 | 0.66 | 0.856941 |
Target: 5'- uGCGCGGCgagGACGCcuucaccUAUGaaGUCGUCg -3' miRNA: 3'- uCGUGUCGaa-CUGCG-------AUAUg-UAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31035 | 0.68 | 0.746076 |
Target: 5'- uGCagACGGCauuACGCUGUcuggccagGCGUCGCCg -3' miRNA: 3'- uCG--UGUCGaacUGCGAUA--------UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 21081 | 0.68 | 0.734846 |
Target: 5'- uGGCGCGGa-UGGCGCcaaggucguccgUGUGCGcCGCCu -3' miRNA: 3'- -UCGUGUCgaACUGCG------------AUAUGUaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 3130 | 0.68 | 0.734846 |
Target: 5'- aAGCGCAGCgcccGCGCUgcccAUGCAcUGCUg -3' miRNA: 3'- -UCGUGUCGaac-UGCGA----UAUGUaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 36660 | 0.69 | 0.6772 |
Target: 5'- cGUAUcGCga-GCGCUGUuCAUCGCCg -3' miRNA: 3'- uCGUGuCGaacUGCGAUAuGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30034 | 0.67 | 0.804066 |
Target: 5'- uAGCGCAGCUcaGcgccgggccauucacGCGCUAUcACcuguUCGCCa -3' miRNA: 3'- -UCGUGUCGAa-C---------------UGCGAUA-UGu---AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 34338 | 0.67 | 0.810175 |
Target: 5'- cAGCAucCGGCUccugcggGACGaCUAUaACGUCGCa -3' miRNA: 3'- -UCGU--GUCGAa------CUGC-GAUA-UGUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 6132 | 0.67 | 0.820184 |
Target: 5'- uGCACAGCaaGGCGgUAg----CGCCg -3' miRNA: 3'- uCGUGUCGaaCUGCgAUauguaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 3857 | 0.66 | 0.829966 |
Target: 5'- cGCacaGCAGCUUGcCGC---GCAUCGUUg -3' miRNA: 3'- uCG---UGUCGAACuGCGauaUGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31372 | 0.66 | 0.848801 |
Target: 5'- gAGCgGCAGCUacuggacaUGACGCUGUuugGCuggggCGCg -3' miRNA: 3'- -UCG-UGUCGA--------ACUGCGAUA---UGua---GCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 34452 | 0.66 | 0.848801 |
Target: 5'- gAGC-CAGCUUauCGUgaaAUACAUCGaCCa -3' miRNA: 3'- -UCGuGUCGAAcuGCGa--UAUGUAGC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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