Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 17597 | 0.76 | 0.299731 |
Target: 5'- cGUugACGGCggc-CGCUGUGCGUCGCCg -3' miRNA: 3'- uCG--UGUCGaacuGCGAUAUGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 17914 | 0.66 | 0.866591 |
Target: 5'- uGGCAgGcGUUUGuggacCGCUccACGUCGCCc -3' miRNA: 3'- -UCGUgU-CGAACu----GCGAuaUGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 18473 | 0.81 | 0.147663 |
Target: 5'- cGCAUAGCcuUUGAUGCUGUcuGCGUCGUCg -3' miRNA: 3'- uCGUGUCG--AACUGCGAUA--UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 19459 | 0.76 | 0.307817 |
Target: 5'- gGGCugGGCcaGGCGCUGcgGCAgguUCGCCa -3' miRNA: 3'- -UCGugUCGaaCUGCGAUa-UGU---AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 20074 | 0.76 | 0.299731 |
Target: 5'- uGGCugGGCcgagUGACGCUGUcCAUgacCGCCa -3' miRNA: 3'- -UCGugUCGa---ACUGCGAUAuGUA---GCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 20697 | 0.69 | 0.697023 |
Target: 5'- uGGC-CGGCUUGAagaGCUAccUGggccaggccaagccCAUCGCCg -3' miRNA: 3'- -UCGuGUCGAACUg--CGAU--AU--------------GUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 20961 | 0.69 | 0.6772 |
Target: 5'- cGCcCAGCUUGACcagggGCgguaaugACGUUGCCa -3' miRNA: 3'- uCGuGUCGAACUG-----CGaua----UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 21081 | 0.68 | 0.734846 |
Target: 5'- uGGCGCGGa-UGGCGCcaaggucguccgUGUGCGcCGCCu -3' miRNA: 3'- -UCGUGUCgaACUGCG------------AUAUGUaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 22803 | 0.66 | 0.866591 |
Target: 5'- cAGUACGGCgaGGCGUc---CAUcCGCCa -3' miRNA: 3'- -UCGUGUCGaaCUGCGauauGUA-GCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 23413 | 0.7 | 0.653702 |
Target: 5'- uGgGCAGCcgugcUGACGUUGUACuaCGCCg -3' miRNA: 3'- uCgUGUCGa----ACUGCGAUAUGuaGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 26063 | 0.66 | 0.857832 |
Target: 5'- cGC-CAGCgacGGC-CUGgacgACAUCGCCc -3' miRNA: 3'- uCGuGUCGaa-CUGcGAUa---UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 26180 | 0.7 | 0.641912 |
Target: 5'- cGGCGCGGCggUGGcCGCUGcggGCGUgGCg -3' miRNA: 3'- -UCGUGUCGa-ACU-GCGAUa--UGUAgCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 26963 | 0.68 | 0.746076 |
Target: 5'- aGGCGCAGaa-GGCGCgccUGgAUCGCUa -3' miRNA: 3'- -UCGUGUCgaaCUGCGau-AUgUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 27209 | 0.72 | 0.502837 |
Target: 5'- cAGCGCAGCccGGCGC---GCuUCGCCc -3' miRNA: 3'- -UCGUGUCGaaCUGCGauaUGuAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 27543 | 0.69 | 0.685384 |
Target: 5'- cAGCACGGUUUGcCGgUuuugcggcacuuuugGCGUCGCCc -3' miRNA: 3'- -UCGUGUCGAACuGCgAua-------------UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 27979 | 0.8 | 0.186589 |
Target: 5'- cAGCGCAGCgcGGCGCaggGCAUCGCg -3' miRNA: 3'- -UCGUGUCGaaCUGCGauaUGUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 29184 | 0.71 | 0.583047 |
Target: 5'- uGCACAGCUguUGcGCGCgguUGCGU-GCCa -3' miRNA: 3'- uCGUGUCGA--AC-UGCGau-AUGUAgCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 29905 | 0.71 | 0.559753 |
Target: 5'- gGGC-CAGCUc-GCGCUGgAgGUCGCCg -3' miRNA: 3'- -UCGuGUCGAacUGCGAUaUgUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30034 | 0.67 | 0.804066 |
Target: 5'- uAGCGCAGCUcaGcgccgggccauucacGCGCUAUcACcuguUCGCCa -3' miRNA: 3'- -UCGUGUCGAa-C---------------UGCGAUA-UGu---AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30297 | 0.68 | 0.768122 |
Target: 5'- cGGCuagACAGCcucGACGgUAgccCAUCGCCg -3' miRNA: 3'- -UCG---UGUCGaa-CUGCgAUau-GUAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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