miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23074 5' -50.4 NC_005178.1 + 26180 0.7 0.641912
Target:  5'- cGGCGCGGCggUGGcCGCUGcggGCGUgGCg -3'
miRNA:   3'- -UCGUGUCGa-ACU-GCGAUa--UGUAgCGg -5'
23074 5' -50.4 NC_005178.1 + 23413 0.7 0.653702
Target:  5'- uGgGCAGCcgugcUGACGUUGUACuaCGCCg -3'
miRNA:   3'- uCgUGUCGa----ACUGCGAUAUGuaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 35040 0.69 0.6772
Target:  5'- cGCgucgGCAGCUcUGGCGCguucGUugAUCGCg -3'
miRNA:   3'- uCG----UGUCGA-ACUGCGa---UAugUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 36660 0.69 0.6772
Target:  5'- cGUAUcGCga-GCGCUGUuCAUCGCCg -3'
miRNA:   3'- uCGUGuCGaacUGCGAUAuGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 9725 0.69 0.688883
Target:  5'- uGCugAGCgUGACGCgucACGUuuUGCCg -3'
miRNA:   3'- uCGugUCGaACUGCGauaUGUA--GCGG- -5'
23074 5' -50.4 NC_005178.1 + 20697 0.69 0.697023
Target:  5'- uGGC-CGGCUUGAagaGCUAccUGggccaggccaagccCAUCGCCg -3'
miRNA:   3'- -UCGuGUCGAACUg--CGAU--AU--------------GUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 17405 0.68 0.723498
Target:  5'- -aCAUGGCcgGGCGCUAUGC--CGCCg -3'
miRNA:   3'- ucGUGUCGaaCUGCGAUAUGuaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 26963 0.68 0.746076
Target:  5'- aGGCGCAGaa-GGCGCgccUGgAUCGCUa -3'
miRNA:   3'- -UCGUGUCgaaCUGCGau-AUgUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 31035 0.68 0.746076
Target:  5'- uGCagACGGCauuACGCUGUcuggccagGCGUCGCCg -3'
miRNA:   3'- uCG--UGUCGaacUGCGAUA--------UGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 21081 0.68 0.734846
Target:  5'- uGGCGCGGa-UGGCGCcaaggucguccgUGUGCGcCGCCu -3'
miRNA:   3'- -UCGUGUCgaACUGCG------------AUAUGUaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 3130 0.68 0.734846
Target:  5'- aAGCGCAGCgcccGCGCUgcccAUGCAcUGCUg -3'
miRNA:   3'- -UCGUGUCGaac-UGCGA----UAUGUaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 8362 0.68 0.733716
Target:  5'- uGGCACGcaaccgcGCgcaacaGCUGUGCAUCGUCa -3'
miRNA:   3'- -UCGUGU-------CGaacug-CGAUAUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 16685 0.68 0.723498
Target:  5'- gGGCGaucaGGCc-GGCGCag-GCAUCGCCc -3'
miRNA:   3'- -UCGUg---UCGaaCUGCGauaUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 9754 0.73 0.438127
Target:  5'- cAGCGCcuugAGCUUGuCGUUGUAC-UCGUCg -3'
miRNA:   3'- -UCGUG----UCGAACuGCGAUAUGuAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 7749 0.74 0.427808
Target:  5'- cGCGCAGCUUGGCGagcaa-GUCgGCCg -3'
miRNA:   3'- uCGUGUCGAACUGCgauaugUAG-CGG- -5'
23074 5' -50.4 NC_005178.1 + 19459 0.76 0.307817
Target:  5'- gGGCugGGCcaGGCGCUGcgGCAgguUCGCCa -3'
miRNA:   3'- -UCGugUCGaaCUGCGAUa-UGU---AGCGG- -5'
23074 5' -50.4 NC_005178.1 + 20074 0.76 0.299731
Target:  5'- uGGCugGGCcgagUGACGCUGUcCAUgacCGCCa -3'
miRNA:   3'- -UCGugUCGa---ACUGCGAUAuGUA---GCGG- -5'
23074 5' -50.4 NC_005178.1 + 27979 0.8 0.186589
Target:  5'- cAGCGCAGCgcGGCGCaggGCAUCGCg -3'
miRNA:   3'- -UCGUGUCGaaCUGCGauaUGUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 18473 0.81 0.147663
Target:  5'- cGCAUAGCcuUUGAUGCUGUcuGCGUCGUCg -3'
miRNA:   3'- uCGUGUCG--AACUGCGAUA--UGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 30392 0.66 0.866591
Target:  5'- aGGCGCGGC---ACGCUuuccagcagcGCAUCGCg -3'
miRNA:   3'- -UCGUGUCGaacUGCGAua--------UGUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.