miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23074 5' -50.4 NC_005178.1 + 1914 0.66 0.843256
Target:  5'- cGCuuCAGCgucgUGcCGCUGUAgaccuggagcgucacCGUCGCCc -3'
miRNA:   3'- uCGu-GUCGa---ACuGCGAUAU---------------GUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 2301 0.66 0.839509
Target:  5'- cGGCGCAGCcgcGCGCgagggugACcgUGCCg -3'
miRNA:   3'- -UCGUGUCGaacUGCGaua----UGuaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 2354 1.12 0.001106
Target:  5'- aAGCACAGCUUGACGCUAUACAUCGCCc -3'
miRNA:   3'- -UCGUGUCGAACUGCGAUAUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 2930 0.67 0.778911
Target:  5'- gAGcCGCAGCUgcuCGCUAUGCucaagAUgGCCc -3'
miRNA:   3'- -UC-GUGUCGAacuGCGAUAUG-----UAgCGG- -5'
23074 5' -50.4 NC_005178.1 + 3130 0.68 0.734846
Target:  5'- aAGCGCAGCgcccGCGCUgcccAUGCAcUGCUg -3'
miRNA:   3'- -UCGUGUCGaac-UGCGA----UAUGUaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 3857 0.66 0.829966
Target:  5'- cGCacaGCAGCUUGcCGC---GCAUCGUUg -3'
miRNA:   3'- uCG---UGUCGAACuGCGauaUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 6132 0.67 0.820184
Target:  5'- uGCACAGCaaGGCGgUAg----CGCCg -3'
miRNA:   3'- uCGUGUCGaaCUGCgAUauguaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 6253 0.68 0.757172
Target:  5'- cGCAUAGCccGGCGCUGggucacgGCugauUCGCUu -3'
miRNA:   3'- uCGUGUCGaaCUGCGAUa------UGu---AGCGG- -5'
23074 5' -50.4 NC_005178.1 + 7346 0.68 0.768122
Target:  5'- gAGCcgACAGaggGGCGCgugacCAUCGCCg -3'
miRNA:   3'- -UCG--UGUCgaaCUGCGauau-GUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 7749 0.74 0.427808
Target:  5'- cGCGCAGCUUGGCGagcaa-GUCgGCCg -3'
miRNA:   3'- uCGUGUCGAACUGCgauaugUAG-CGG- -5'
23074 5' -50.4 NC_005178.1 + 8362 0.68 0.733716
Target:  5'- uGGCACGcaaccgcGCgcaacaGCUGUGCAUCGUCa -3'
miRNA:   3'- -UCGUGU-------CGaacug-CGAUAUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 9580 0.67 0.778911
Target:  5'- uGCGCcGCgcuGCGCUGgGCGgUCGCCg -3'
miRNA:   3'- uCGUGuCGaacUGCGAUaUGU-AGCGG- -5'
23074 5' -50.4 NC_005178.1 + 9657 0.68 0.768122
Target:  5'- uGCGCGGCcgGugGCU-----UCGCCg -3'
miRNA:   3'- uCGUGUCGaaCugCGAuauguAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 9725 0.69 0.688883
Target:  5'- uGCugAGCgUGACGCgucACGUuuUGCCg -3'
miRNA:   3'- uCGugUCGaACUGCGauaUGUA--GCGG- -5'
23074 5' -50.4 NC_005178.1 + 9754 0.73 0.438127
Target:  5'- cAGCGCcuugAGCUUGuCGUUGUAC-UCGUCg -3'
miRNA:   3'- -UCGUG----UCGAACuGCGAUAUGuAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 11762 0.7 0.641912
Target:  5'- uGCuccuGgAGCUUGGCGUUGUAgGUCGUa -3'
miRNA:   3'- uCG----UgUCGAACUGCGAUAUgUAGCGg -5'
23074 5' -50.4 NC_005178.1 + 13097 0.67 0.810175
Target:  5'- uGUACAGCUcGACGaugaccgGCG-CGCCg -3'
miRNA:   3'- uCGUGUCGAaCUGCgaua---UGUaGCGG- -5'
23074 5' -50.4 NC_005178.1 + 16685 0.68 0.723498
Target:  5'- gGGCGaucaGGCc-GGCGCag-GCAUCGCCc -3'
miRNA:   3'- -UCGUg---UCGaaCUGCGauaUGUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 17140 0.83 0.119828
Target:  5'- cGCGCAGCUUGGCcagGUugGUCGCCu -3'
miRNA:   3'- uCGUGUCGAACUGcgaUAugUAGCGG- -5'
23074 5' -50.4 NC_005178.1 + 17405 0.68 0.723498
Target:  5'- -aCAUGGCcgGGCGCUAUGC--CGCCg -3'
miRNA:   3'- ucGUGUCGaaCUGCGAUAUGuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.