Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23074 | 5' | -50.4 | NC_005178.1 | + | 36660 | 0.69 | 0.6772 |
Target: 5'- cGUAUcGCga-GCGCUGUuCAUCGCCg -3' miRNA: 3'- uCGUGuCGaacUGCGAUAuGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 35822 | 0.67 | 0.820184 |
Target: 5'- cGGCcCAGUUcGGCGagcaGUGCAUCGCg -3' miRNA: 3'- -UCGuGUCGAaCUGCga--UAUGUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 35433 | 0.68 | 0.757172 |
Target: 5'- --gACAGCcUGACGCUGacCGggCGCCa -3' miRNA: 3'- ucgUGUCGaACUGCGAUauGUa-GCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 35040 | 0.69 | 0.6772 |
Target: 5'- cGCgucgGCAGCUcUGGCGCguucGUugAUCGCg -3' miRNA: 3'- uCG----UGUCGA-ACUGCGa---UAugUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 34452 | 0.66 | 0.848801 |
Target: 5'- gAGC-CAGCUUauCGUgaaAUACAUCGaCCa -3' miRNA: 3'- -UCGuGUCGAAcuGCGa--UAUGUAGC-GG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 34338 | 0.67 | 0.810175 |
Target: 5'- cAGCAucCGGCUccugcggGACGaCUAUaACGUCGCa -3' miRNA: 3'- -UCGU--GUCGAa------CUGC-GAUA-UGUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 33699 | 0.66 | 0.839509 |
Target: 5'- uGCGCGGCaaGcUGCUGUGCG--GCCg -3' miRNA: 3'- uCGUGUCGaaCuGCGAUAUGUagCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 32821 | 0.66 | 0.857832 |
Target: 5'- uGCACGGCagucgUUGGCGac---CAUCGCUg -3' miRNA: 3'- uCGUGUCG-----AACUGCgauauGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 32225 | 0.66 | 0.857832 |
Target: 5'- uGUACAGCUccagguucaGGCGCUGgAgGUCgGCCa -3' miRNA: 3'- uCGUGUCGAa--------CUGCGAUaUgUAG-CGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31902 | 0.66 | 0.866591 |
Target: 5'- cGC-CGGgaUGGCGCUGccgguCAUCgGCCa -3' miRNA: 3'- uCGuGUCgaACUGCGAUau---GUAG-CGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31577 | 0.69 | 0.68188 |
Target: 5'- cAGCGCcccgcgaacgacuccGGgUUGugGCUgGUACuUCGCCg -3' miRNA: 3'- -UCGUG---------------UCgAACugCGA-UAUGuAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31538 | 0.66 | 0.856941 |
Target: 5'- uGCGCGGCgagGACGCcuucaccUAUGaaGUCGUCg -3' miRNA: 3'- uCGUGUCGaa-CUGCG-------AUAUg-UAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31372 | 0.66 | 0.848801 |
Target: 5'- gAGCgGCAGCUacuggacaUGACGCUGUuugGCuggggCGCg -3' miRNA: 3'- -UCG-UGUCGA--------ACUGCGAUA---UGua---GCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 31035 | 0.68 | 0.746076 |
Target: 5'- uGCagACGGCauuACGCUGUcuggccagGCGUCGCCg -3' miRNA: 3'- uCG--UGUCGaacUGCGAUA--------UGUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30904 | 0.66 | 0.828999 |
Target: 5'- uGCAgCGGUUUGACGCUcaaggugAUugAUaGCCc -3' miRNA: 3'- uCGU-GUCGAACUGCGA-------UAugUAgCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30516 | 0.7 | 0.641912 |
Target: 5'- cAGCGCGGCcaggacacGACGCUcgACGcggaUCGUCg -3' miRNA: 3'- -UCGUGUCGaa------CUGCGAuaUGU----AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30392 | 0.66 | 0.866591 |
Target: 5'- aGGCGCGGC---ACGCUuuccagcagcGCAUCGCg -3' miRNA: 3'- -UCGUGUCGaacUGCGAua--------UGUAGCGg -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30297 | 0.68 | 0.768122 |
Target: 5'- cGGCuagACAGCcucGACGgUAgccCAUCGCCg -3' miRNA: 3'- -UCG---UGUCGaa-CUGCgAUau-GUAGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 30034 | 0.67 | 0.804066 |
Target: 5'- uAGCGCAGCUcaGcgccgggccauucacGCGCUAUcACcuguUCGCCa -3' miRNA: 3'- -UCGUGUCGAa-C---------------UGCGAUA-UGu---AGCGG- -5' |
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23074 | 5' | -50.4 | NC_005178.1 | + | 29905 | 0.71 | 0.559753 |
Target: 5'- gGGC-CAGCUc-GCGCUGgAgGUCGCCg -3' miRNA: 3'- -UCGuGUCGAacUGCGAUaUgUAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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