miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23076 3' -61.6 NC_005178.1 + 23450 0.66 0.320556
Target:  5'- aGGGcGAcGGCcagGGCGCCCgGCGCgaagccgGCCCg -3'
miRNA:   3'- -CCU-CU-UCGcg-UCGCGGG-CGCGa------CGGG- -5'
23076 3' -61.6 NC_005178.1 + 18085 0.66 0.305336
Target:  5'- uGGcGAAccuGcCGCAGCGCCUG-GCccaGCCCg -3'
miRNA:   3'- -CCuCUU---C-GCGUCGCGGGCgCGa--CGGG- -5'
23076 3' -61.6 NC_005178.1 + 17337 0.66 0.305336
Target:  5'- cGAGGucgcccAGCuCGGCaGCCCGCGCcgGCUg -3'
miRNA:   3'- cCUCU------UCGcGUCG-CGGGCGCGa-CGGg -5'
23076 3' -61.6 NC_005178.1 + 4003 0.66 0.305336
Target:  5'- aGGuGcuGCGCAcCGUCCGCcGCUGCg- -3'
miRNA:   3'- -CCuCuuCGCGUcGCGGGCG-CGACGgg -5'
23076 3' -61.6 NC_005178.1 + 4434 0.66 0.300879
Target:  5'- uGGGGAGguugcugaauuugucGuCGCAG-GUCUGCGCgaGCCCg -3'
miRNA:   3'- -CCUCUU---------------C-GCGUCgCGGGCGCGa-CGGG- -5'
23076 3' -61.6 NC_005178.1 + 6303 0.66 0.290676
Target:  5'- --cGAGGCGCucaGGCGCUCGacgauGCUGUCg -3'
miRNA:   3'- ccuCUUCGCG---UCGCGGGCg----CGACGGg -5'
23076 3' -61.6 NC_005178.1 + 15795 0.66 0.283555
Target:  5'- uGGA-AAGCggaGCGGUGCCCuuGUUGCUCa -3'
miRNA:   3'- -CCUcUUCG---CGUCGCGGGcgCGACGGG- -5'
23076 3' -61.6 NC_005178.1 + 11143 0.66 0.283555
Target:  5'- ----cAGCGCgGGCGCCCuggcCGCcGCCCu -3'
miRNA:   3'- ccucuUCGCG-UCGCGGGc---GCGaCGGG- -5'
23076 3' -61.6 NC_005178.1 + 7834 0.67 0.269729
Target:  5'- aGGGGuuGcCGgAGCGCCa-CGCUGUCUg -3'
miRNA:   3'- -CCUCuuC-GCgUCGCGGgcGCGACGGG- -5'
23076 3' -61.6 NC_005178.1 + 9003 0.67 0.265688
Target:  5'- cGGu--GGCGCGGCggacgGCCCccgcccagucauguaGCGCcGCCCa -3'
miRNA:   3'- -CCucuUCGCGUCG-----CGGG---------------CGCGaCGGG- -5'
23076 3' -61.6 NC_005178.1 + 15096 0.67 0.263021
Target:  5'- uGGuGAAGCGCucgGCCaaggCGgGCUGUCCa -3'
miRNA:   3'- -CCuCUUCGCGucgCGG----GCgCGACGGG- -5'
23076 3' -61.6 NC_005178.1 + 23216 0.67 0.256451
Target:  5'- uGGAGA--CGCuccuggucgAGCGCauCCGCGCcgaggUGCCCg -3'
miRNA:   3'- -CCUCUucGCG---------UCGCG--GGCGCG-----ACGGG- -5'
23076 3' -61.6 NC_005178.1 + 16927 0.67 0.256451
Target:  5'- cGGAuauGGaCGaCAGCGCCCugGCGgaUGCCCu -3'
miRNA:   3'- -CCUcu-UC-GC-GUCGCGGG--CGCg-ACGGG- -5'
23076 3' -61.6 NC_005178.1 + 27987 0.67 0.255801
Target:  5'- --cGcGGCGCAgggcaucGCGCUCGCGCUucGCUCg -3'
miRNA:   3'- ccuCuUCGCGU-------CGCGGGCGCGA--CGGG- -5'
23076 3' -61.6 NC_005178.1 + 11100 0.67 0.243713
Target:  5'- ----cGGCcgGCAGCG-CCGCGCUGCUg -3'
miRNA:   3'- ccucuUCG--CGUCGCgGGCGCGACGGg -5'
23076 3' -61.6 NC_005178.1 + 34423 0.68 0.225597
Target:  5'- uGGGcAGCGCGG-GCgCUGCGCUucuccgGCCCu -3'
miRNA:   3'- cCUCuUCGCGUCgCG-GGCGCGA------CGGG- -5'
23076 3' -61.6 NC_005178.1 + 27205 0.68 0.225597
Target:  5'- cGGcc-AGCGCAGC-CCgGCGCgcuucGCCCc -3'
miRNA:   3'- -CCucuUCGCGUCGcGGgCGCGa----CGGG- -5'
23076 3' -61.6 NC_005178.1 + 16983 0.68 0.214165
Target:  5'- cGAGAGGU-CAGCG-CCGCGaccugGCCCu -3'
miRNA:   3'- cCUCUUCGcGUCGCgGGCGCga---CGGG- -5'
23076 3' -61.6 NC_005178.1 + 13646 0.68 0.210833
Target:  5'- cGAGAacgccguugacgauaGGCGCGGCGUcaaucUCGCcUUGCCCg -3'
miRNA:   3'- cCUCU---------------UCGCGUCGCG-----GGCGcGACGGG- -5'
23076 3' -61.6 NC_005178.1 + 6118 0.68 0.208091
Target:  5'- uGGAGcagcuggauaucAGGCcagaucgGCAGCGCCCaaacGCGCgcGCCCc -3'
miRNA:   3'- -CCUC------------UUCG-------CGUCGCGGG----CGCGa-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.