miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23077 5' -54.5 NC_005178.1 + 34432 0.66 0.642934
Target:  5'- -cGGGCGCUGCGCuucuCCGgcccuugguagaucgUCAUgaaggcaggCGCCc -3'
miRNA:   3'- guUCCGUGACGCG----GGCa--------------AGUAa--------GCGG- -5'
23077 5' -54.5 NC_005178.1 + 9829 0.66 0.641794
Target:  5'- -cAGGCGCUGCuGCgCGaaUCggUCGUCa -3'
miRNA:   3'- guUCCGUGACG-CGgGCa-AGuaAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 344 0.66 0.630392
Target:  5'- --cGGCGCUGUGCCgGUagCGauggCGUCa -3'
miRNA:   3'- guuCCGUGACGCGGgCAa-GUaa--GCGG- -5'
23077 5' -54.5 NC_005178.1 + 28040 0.66 0.618991
Target:  5'- --cGGCGCUgGCgGUCUGUcuugguUCGUUCGUCa -3'
miRNA:   3'- guuCCGUGA-CG-CGGGCA------AGUAAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 11684 0.67 0.596237
Target:  5'- --cGGC-CUGCGCaCCGUcgaaucgcugaUCGcUCGCUg -3'
miRNA:   3'- guuCCGuGACGCG-GGCA-----------AGUaAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 16393 0.67 0.591699
Target:  5'- -uAGGCggguuucaucaGgUGCGCCUGggugacgcugccgUCGUUCGCCc -3'
miRNA:   3'- guUCCG-----------UgACGCGGGCa------------AGUAAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 6884 0.67 0.573613
Target:  5'- uGGGGCgaGCgucCGCCCGUcuUCGUccagcugcUCGCCg -3'
miRNA:   3'- gUUCCG--UGac-GCGGGCA--AGUA--------AGCGG- -5'
23077 5' -54.5 NC_005178.1 + 21040 0.67 0.573613
Target:  5'- gGGGGCGCgGCGUgCG-UCGaggUUGCCg -3'
miRNA:   3'- gUUCCGUGaCGCGgGCaAGUa--AGCGG- -5'
23077 5' -54.5 NC_005178.1 + 23448 0.67 0.573613
Target:  5'- cCAGGGCgACggccaggGCGCCCGgcgCGaa-GCCg -3'
miRNA:   3'- -GUUCCG-UGa------CGCGGGCaa-GUaagCGG- -5'
23077 5' -54.5 NC_005178.1 + 13588 0.67 0.566863
Target:  5'- -uGGGCGCUGUucaguugggauugcaGCCCGagCAacaCGCCg -3'
miRNA:   3'- guUCCGUGACG---------------CGGGCaaGUaa-GCGG- -5'
23077 5' -54.5 NC_005178.1 + 5722 0.67 0.562374
Target:  5'- -cAGGCGCUGauaGCUCGacgUCAggucUUCGCUu -3'
miRNA:   3'- guUCCGUGACg--CGGGCa--AGU----AAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 9585 0.67 0.562374
Target:  5'- ---cGCGCUGCGCUgGgcgg-UCGCCg -3'
miRNA:   3'- guucCGUGACGCGGgCaaguaAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 18135 0.68 0.529052
Target:  5'- cCGAGGCcgagcagcucgGCUGCGCgCCGUUgGcugaUGCCg -3'
miRNA:   3'- -GUUCCG-----------UGACGCG-GGCAAgUaa--GCGG- -5'
23077 5' -54.5 NC_005178.1 + 3073 0.68 0.529052
Target:  5'- --uGGCGCUGCGCCCcgUCGaUCugGUCg -3'
miRNA:   3'- guuCCGUGACGCGGGcaAGUaAG--CGG- -5'
23077 5' -54.5 NC_005178.1 + 6389 0.68 0.507244
Target:  5'- aGGGGCGuCUGCGCUCGauug-UCGCg -3'
miRNA:   3'- gUUCCGU-GACGCGGGCaaguaAGCGg -5'
23077 5' -54.5 NC_005178.1 + 34230 0.68 0.504005
Target:  5'- -cGGGCugUGCuuugaauggaccagGUCCGacaCGUUCGCCa -3'
miRNA:   3'- guUCCGugACG--------------CGGGCaa-GUAAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 24902 0.68 0.496483
Target:  5'- gCAAGGCggaugACUGgGUCCGUUCGcucCGUCc -3'
miRNA:   3'- -GUUCCG-----UGACgCGGGCAAGUaa-GCGG- -5'
23077 5' -54.5 NC_005178.1 + 8141 0.68 0.495413
Target:  5'- gAGGGCGCcaucgagauCGCCCGUggggacgaccaggUCGUUCGCg -3'
miRNA:   3'- gUUCCGUGac-------GCGGGCA-------------AGUAAGCGg -5'
23077 5' -54.5 NC_005178.1 + 19468 0.68 0.485827
Target:  5'- -cAGGCGCUGCGgCag---GUUCGCCa -3'
miRNA:   3'- guUCCGUGACGCgGgcaagUAAGCGG- -5'
23077 5' -54.5 NC_005178.1 + 34487 0.69 0.45454
Target:  5'- aCGGGGCGCaGCGCCaaaUCAU-CGUCa -3'
miRNA:   3'- -GUUCCGUGaCGCGGgcaAGUAaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.