Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23078 | 3' | -58.5 | NC_005178.1 | + | 20930 | 0.66 | 0.438794 |
Target: 5'- gCCGAGGUCauCGGCgugCCGGUa-GCGGCa -3' miRNA: 3'- -GGCUCCAG--GUCGug-GGCUAcgUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 16303 | 0.66 | 0.478343 |
Target: 5'- aCGccGUCCGGUucgACgCCGAUGaUGCGGCc -3' miRNA: 3'- gGCucCAGGUCG---UG-GGCUAC-GUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 18228 | 0.66 | 0.448509 |
Target: 5'- gCGucAGGcUUCAGCACCgaaugccuCGAcuUGCAUGGCg -3' miRNA: 3'- gGC--UCC-AGGUCGUGG--------GCU--ACGUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 19676 | 0.66 | 0.447532 |
Target: 5'- aCCG-GGUCCaggAGCACguccuggaccucgCCGA-GgGCGGCa -3' miRNA: 3'- -GGCuCCAGG---UCGUG-------------GGCUaCgUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 2800 | 0.66 | 0.447532 |
Target: 5'- gCCGAGGaaguuguccucgaUCCGGCcgACCCGAacgACGGUu -3' miRNA: 3'- -GGCUCC-------------AGGUCG--UGGGCUacgUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 22006 | 0.66 | 0.438794 |
Target: 5'- gCUGGGGU-CAGCcccuugGCCgGGUGguUGGCg -3' miRNA: 3'- -GGCUCCAgGUCG------UGGgCUACguGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 32721 | 0.66 | 0.478343 |
Target: 5'- gCG-GGUCCAGacgcuuuugGCCUGGacguaguagGCGCGGCg -3' miRNA: 3'- gGCuCCAGGUCg--------UGGGCUa--------CGUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 17936 | 0.66 | 0.438794 |
Target: 5'- aCGGGGUUaacGCACCgacucUGAUGCgaguaGCGGCu -3' miRNA: 3'- gGCUCCAGgu-CGUGG-----GCUACG-----UGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 18386 | 0.66 | 0.438794 |
Target: 5'- aCCGAcacCCuGC-CgCUGAUGCGCGGCa -3' miRNA: 3'- -GGCUccaGGuCGuG-GGCUACGUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 16618 | 0.66 | 0.478343 |
Target: 5'- gCCGcua-CCGGCACgCCGAUGaccuCGGCg -3' miRNA: 3'- -GGCuccaGGUCGUG-GGCUACgu--GCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 5632 | 0.66 | 0.438794 |
Target: 5'- gCCGA--UCCAGCGauggCCGAUGaC-CGGCa -3' miRNA: 3'- -GGCUccAGGUCGUg---GGCUAC-GuGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 13875 | 0.66 | 0.478343 |
Target: 5'- cCCGaAGG-CCAGCgccGCCCGgcGUgaACGGg -3' miRNA: 3'- -GGC-UCCaGGUCG---UGGGCuaCG--UGCCg -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 31520 | 0.67 | 0.429201 |
Target: 5'- aCGGcGGUCUGGCGa-UGcUGCGCGGCg -3' miRNA: 3'- gGCU-CCAGGUCGUggGCuACGUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 3054 | 0.67 | 0.429201 |
Target: 5'- gCCGaAGGUCCGcCGCCCGGacaUGagcguucccgaCugGGCg -3' miRNA: 3'- -GGC-UCCAGGUcGUGGGCU---AC-----------GugCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 25646 | 0.67 | 0.382273 |
Target: 5'- aCCGcAGGcguugcaUCaCAGCACCUcccGCACGGCc -3' miRNA: 3'- -GGC-UCC-------AG-GUCGUGGGcuaCGUGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 18134 | 0.67 | 0.401181 |
Target: 5'- aCCGAGGcCgAGCAgCUCGGcUGCGCGcCg -3' miRNA: 3'- -GGCUCCaGgUCGU-GGGCU-ACGUGCcG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 7988 | 0.67 | 0.399355 |
Target: 5'- cCCGAGGccgUCCaggGGCugCCGggGCugacccugacacCGGCa -3' miRNA: 3'- -GGCUCC---AGG---UCGugGGCuaCGu-----------GCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 7768 | 0.67 | 0.392103 |
Target: 5'- gCGGaGUCCAGU-CCUGGUGCGaGGCc -3' miRNA: 3'- gGCUcCAGGUCGuGGGCUACGUgCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 5317 | 0.67 | 0.383159 |
Target: 5'- gCCGAccUCCAGCGCCUGAaccuggagcUGUacaccgguGCGGCc -3' miRNA: 3'- -GGCUccAGGUCGUGGGCU---------ACG--------UGCCG- -5' |
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23078 | 3' | -58.5 | NC_005178.1 | + | 6387 | 0.67 | 0.383159 |
Target: 5'- -aGAGGggcgUCuGCGCUCGAuUGuCGCGGCg -3' miRNA: 3'- ggCUCCa---GGuCGUGGGCU-AC-GUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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