miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23078 3' -58.5 NC_005178.1 + 18386 0.66 0.438794
Target:  5'- aCCGAcacCCuGC-CgCUGAUGCGCGGCa -3'
miRNA:   3'- -GGCUccaGGuCGuG-GGCUACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 5317 0.67 0.383159
Target:  5'- gCCGAccUCCAGCGCCUGAaccuggagcUGUacaccgguGCGGCc -3'
miRNA:   3'- -GGCUccAGGUCGUGGGCU---------ACG--------UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 7768 0.67 0.392103
Target:  5'- gCGGaGUCCAGU-CCUGGUGCGaGGCc -3'
miRNA:   3'- gGCUcCAGGUCGuGGGCUACGUgCCG- -5'
23078 3' -58.5 NC_005178.1 + 7988 0.67 0.399355
Target:  5'- cCCGAGGccgUCCaggGGCugCCGggGCugacccugacacCGGCa -3'
miRNA:   3'- -GGCUCC---AGG---UCGugGGCuaCGu-----------GCCG- -5'
23078 3' -58.5 NC_005178.1 + 12191 0.67 0.401181
Target:  5'- aCUGAagacGGUCCAGgACaCCa--GCGCGGCu -3'
miRNA:   3'- -GGCU----CCAGGUCgUG-GGcuaCGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 33891 0.67 0.410391
Target:  5'- aCCaGGGcGUCCugccGCGCCuggcggCGAUGCuCGGCg -3'
miRNA:   3'- -GG-CUC-CAGGu---CGUGG------GCUACGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 28185 0.67 0.419732
Target:  5'- gCCucGG-CCGGCGCCCuGGcgacUGCugGCGGCa -3'
miRNA:   3'- -GGcuCCaGGUCGUGGG-CU----ACG--UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 3054 0.67 0.429201
Target:  5'- gCCGaAGGUCCGcCGCCCGGacaUGagcguucccgaCugGGCg -3'
miRNA:   3'- -GGC-UCCAGGUcGUGGGCU---AC-----------GugCCG- -5'
23078 3' -58.5 NC_005178.1 + 31520 0.67 0.429201
Target:  5'- aCGGcGGUCUGGCGa-UGcUGCGCGGCg -3'
miRNA:   3'- gGCU-CCAGGUCGUggGCuACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 6387 0.67 0.383159
Target:  5'- -aGAGGggcgUCuGCGCUCGAuUGuCGCGGCg -3'
miRNA:   3'- ggCUCCa---GGuCGUGGGCU-AC-GUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 17870 0.68 0.365685
Target:  5'- gCGAGGUCCAggacgugcuccuGgACCCGGUacgccagcGCGCcuGGCa -3'
miRNA:   3'- gGCUCCAGGU------------CgUGGGCUA--------CGUG--CCG- -5'
23078 3' -58.5 NC_005178.1 + 5713 0.68 0.363111
Target:  5'- uCCucGGUCCAGCGacCCCGGaGCAgaucgccgcaucggUGGCg -3'
miRNA:   3'- -GGcuCCAGGUCGU--GGGCUaCGU--------------GCCG- -5'
23078 3' -58.5 NC_005178.1 + 7849 0.79 0.058312
Target:  5'- gCGAGGUCCAGUGgcgcauccguccCCCGuccgugacuGUGCGCGGCg -3'
miRNA:   3'- gGCUCCAGGUCGU------------GGGC---------UACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 18345 0.75 0.115222
Target:  5'- gCGAGGUCCaggAGCGCCUGGcgGCacucuacGCGGCu -3'
miRNA:   3'- gGCUCCAGG---UCGUGGGCUa-CG-------UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 14283 0.72 0.196518
Target:  5'- gCCaAGGUCCAGguCUUcggcuccggcaagcgGAUGCGCGGCc -3'
miRNA:   3'- -GGcUCCAGGUCguGGG---------------CUACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 17335 0.7 0.252643
Target:  5'- gCCGAGGUcgcCCAGCucggcaGCCCGc-GC-CGGCu -3'
miRNA:   3'- -GGCUCCA---GGUCG------UGGGCuaCGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 26711 0.7 0.258532
Target:  5'- gCCGGGGUggCCaagGGCGCCUGGgacgaaaUGCuCGGCg -3'
miRNA:   3'- -GGCUCCA--GG---UCGUGGGCU-------ACGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 37484 0.7 0.272019
Target:  5'- aCCGAGGaCCAGCGCgaaugcaUCGAgcaGCuCGGCc -3'
miRNA:   3'- -GGCUCCaGGUCGUG-------GGCUa--CGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 24299 0.69 0.308957
Target:  5'- gCGAGGUCCaacugcugGGuCugCCGAcGC-CGGCc -3'
miRNA:   3'- gGCUCCAGG--------UC-GugGGCUaCGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 12015 0.68 0.332415
Target:  5'- gCCGAGGUCUuccgaaugaccuGGCGCCUcg-GCuuGGCc -3'
miRNA:   3'- -GGCUCCAGG------------UCGUGGGcuaCGugCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.