miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23078 3' -58.5 NC_005178.1 + 3355 1.12 0.00021
Target:  5'- gCCGAGGUCCAGCACCCGAUGCACGGCc -3'
miRNA:   3'- -GGCUCCAGGUCGUGGGCUACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 7849 0.79 0.058312
Target:  5'- gCGAGGUCCAGUGgcgcauccguccCCCGuccgugacuGUGCGCGGCg -3'
miRNA:   3'- gGCUCCAGGUCGU------------GGGC---------UACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 8980 0.77 0.092222
Target:  5'- gCGGGGaaugCCGGCGacgccCCCGGUgGCGCGGCg -3'
miRNA:   3'- gGCUCCa---GGUCGU-----GGGCUA-CGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 18345 0.75 0.115222
Target:  5'- gCGAGGUCCaggAGCGCCUGGcgGCacucuacGCGGCu -3'
miRNA:   3'- gGCUCCAGG---UCGUGGGCUa-CG-------UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 2691 0.75 0.115222
Target:  5'- cCCGAGGcgUCCGGUcgggcggaauccaGCCCGGUGgugGCGGCg -3'
miRNA:   3'- -GGCUCC--AGGUCG-------------UGGGCUACg--UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 4546 0.75 0.122185
Target:  5'- aUCG-GGUCCGGCgugccGCUCGAUGUAgCGGCu -3'
miRNA:   3'- -GGCuCCAGGUCG-----UGGGCUACGU-GCCG- -5'
23078 3' -58.5 NC_005178.1 + 16798 0.73 0.165424
Target:  5'- aCCGAGGUacgcCCGGCGCuCUGcUGUugGGUc -3'
miRNA:   3'- -GGCUCCA----GGUCGUG-GGCuACGugCCG- -5'
23078 3' -58.5 NC_005178.1 + 31765 0.72 0.193916
Target:  5'- -gGAGGUCgaugaagUAGCGCUgaaCGGUGCugGGCg -3'
miRNA:   3'- ggCUCCAG-------GUCGUGG---GCUACGugCCG- -5'
23078 3' -58.5 NC_005178.1 + 14283 0.72 0.196518
Target:  5'- gCCaAGGUCCAGguCUUcggcuccggcaagcgGAUGCGCGGCc -3'
miRNA:   3'- -GGcUCCAGGUCguGGG---------------CUACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 30813 0.72 0.205052
Target:  5'- aUGGGGaUCAGUGCUCGgcGCAUGGCg -3'
miRNA:   3'- gGCUCCaGGUCGUGGGCuaCGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 28493 0.71 0.227798
Target:  5'- -gGAGG-CCGGUgACCgCGAgcgcgGCGCGGCa -3'
miRNA:   3'- ggCUCCaGGUCG-UGG-GCUa----CGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 33679 0.71 0.239952
Target:  5'- gCCGGuGUUCGGguCaaCGAUGCGCGGCa -3'
miRNA:   3'- -GGCUcCAGGUCguGg-GCUACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 17335 0.7 0.252643
Target:  5'- gCCGAGGUcgcCCAGCucggcaGCCCGc-GC-CGGCu -3'
miRNA:   3'- -GGCUCCA---GGUCG------UGGGCuaCGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 26711 0.7 0.258532
Target:  5'- gCCGGGGUggCCaagGGCGCCUGGgacgaaaUGCuCGGCg -3'
miRNA:   3'- -GGCUCCA--GG---UCGUGGGCU-------ACGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 333 0.7 0.265881
Target:  5'- gCUGucAGGUCCGGCGCugugCCGGUaGCgAUGGCg -3'
miRNA:   3'- -GGC--UCCAGGUCGUG----GGCUA-CG-UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 37484 0.7 0.272019
Target:  5'- aCCGAGGaCCAGCGCgaaugcaUCGAgcaGCuCGGCc -3'
miRNA:   3'- -GGCUCCaGGUCGUG-------GGCUa--CGuGCCG- -5'
23078 3' -58.5 NC_005178.1 + 20775 0.7 0.279675
Target:  5'- aCCu-GGUCCAGCGcuuCCUGAU-CGCGGUa -3'
miRNA:   3'- -GGcuCCAGGUCGU---GGGCUAcGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 9059 0.69 0.299191
Target:  5'- uUGAuGUCCAGCAgcagcggaguaagcCCUGGcUGCAUGGCg -3'
miRNA:   3'- gGCUcCAGGUCGU--------------GGGCU-ACGUGCCG- -5'
23078 3' -58.5 NC_005178.1 + 16336 0.69 0.308957
Target:  5'- gCCGGGGagCGGguUUCGGUGCcguccgugGCGGCg -3'
miRNA:   3'- -GGCUCCagGUCguGGGCUACG--------UGCCG- -5'
23078 3' -58.5 NC_005178.1 + 24299 0.69 0.308957
Target:  5'- gCGAGGUCCaacugcugGGuCugCCGAcGC-CGGCc -3'
miRNA:   3'- gGCUCCAGG--------UC-GugGGCUaCGuGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.