Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23078 | 5' | -52.6 | NC_005178.1 | + | 3390 | 1.09 | 0.001182 |
Target: 5'- cCGGCCGGAAAUCACCACCAUCAUCGAc -3' miRNA: 3'- -GCCGGCCUUUAGUGGUGGUAGUAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 27141 | 0.81 | 0.122408 |
Target: 5'- gCGGCCGGAAaauAUCGCCGCCGcucgcaaggcCAUCGAu -3' miRNA: 3'- -GCCGGCCUU---UAGUGGUGGUa---------GUAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 34178 | 0.77 | 0.204489 |
Target: 5'- cCGGCCGGAAGg-GCCGgCCGUgCAUCGGg -3' miRNA: 3'- -GCCGGCCUUUagUGGU-GGUA-GUAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 32155 | 0.73 | 0.383193 |
Target: 5'- aCGGCaCGGucuAUCACCGCCG-CAUCc- -3' miRNA: 3'- -GCCG-GCCuu-UAGUGGUGGUaGUAGcu -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 1564 | 0.73 | 0.392552 |
Target: 5'- uGGCCGGAAGUCGgCAgCGUUG-CGAc -3' miRNA: 3'- gCCGGCCUUUAGUgGUgGUAGUaGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 21235 | 0.73 | 0.392552 |
Target: 5'- cCGGCCGGccg-CAUCAUCggCGUCGAa -3' miRNA: 3'- -GCCGGCCuuuaGUGGUGGuaGUAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 31902 | 0.72 | 0.411711 |
Target: 5'- -cGCCGGGAuggCGCUGCCgGUCAUCGGc -3' miRNA: 3'- gcCGGCCUUua-GUGGUGG-UAGUAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 11215 | 0.72 | 0.421506 |
Target: 5'- cCGGCUGu---UCugCACCAUCGUCGc -3' miRNA: 3'- -GCCGGCcuuuAGugGUGGUAGUAGCu -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 31172 | 0.7 | 0.504528 |
Target: 5'- gCGaGCCGGAccugguccuGGUCAUCACCGgcaAUCGGa -3' miRNA: 3'- -GC-CGGCCU---------UUAGUGGUGGUag-UAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 12794 | 0.7 | 0.5264 |
Target: 5'- cCGGCagucccUGGAGGUCgcgGCCGCCAUguUCGGc -3' miRNA: 3'- -GCCG------GCCUUUAG---UGGUGGUAguAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 32117 | 0.7 | 0.548618 |
Target: 5'- uCGGCCGGGccGUCGCgaCAUCcgUAUCGAg -3' miRNA: 3'- -GCCGGCCUu-UAGUG--GUGGuaGUAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 28998 | 0.69 | 0.558714 |
Target: 5'- gCGGCaugaccaauugacUGGGGcgCACUACCGUCAacUCGAc -3' miRNA: 3'- -GCCG-------------GCCUUuaGUGGUGGUAGU--AGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 4996 | 0.69 | 0.559839 |
Target: 5'- uGGUCGGAcugcgGAUCGCCGgagcagauaauuCCGUUGUCGGu -3' miRNA: 3'- gCCGGCCU-----UUAGUGGU------------GGUAGUAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 14991 | 0.69 | 0.593841 |
Target: 5'- -uGCCGGAcaaGAUCAUCGaagaCAUCAUCGc -3' miRNA: 3'- gcCGGCCU---UUAGUGGUg---GUAGUAGCu -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 17070 | 0.69 | 0.593841 |
Target: 5'- gCGGCCGGAG---GCCGCCAUUg---- -3' miRNA: 3'- -GCCGGCCUUuagUGGUGGUAGuagcu -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 16333 | 0.69 | 0.615555 |
Target: 5'- cCGGCCGGGGAgcggguuUCGgUGCCGUCcgUGGc -3' miRNA: 3'- -GCCGGCCUUU-------AGUgGUGGUAGuaGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 34772 | 0.68 | 0.639617 |
Target: 5'- uCGGCgaCGGcaAGAUCACCcugACCGUCGUCc- -3' miRNA: 3'- -GCCG--GCC--UUUAGUGG---UGGUAGUAGcu -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 15425 | 0.68 | 0.639617 |
Target: 5'- uGGuaGGAgacgcaacGAUgGCCGCCAUCGUgGAu -3' miRNA: 3'- gCCggCCU--------UUAgUGGUGGUAGUAgCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 28343 | 0.68 | 0.673908 |
Target: 5'- uGGCUGGuugucuucGAUCACCAgCAUUuUCGGc -3' miRNA: 3'- gCCGGCCu-------UUAGUGGUgGUAGuAGCU- -5' |
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23078 | 5' | -52.6 | NC_005178.1 | + | 17493 | 0.67 | 0.685268 |
Target: 5'- aGGCCGGAGccuUCG-CGCCAU--UCGAa -3' miRNA: 3'- gCCGGCCUUu--AGUgGUGGUAguAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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