miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23078 5' -52.6 NC_005178.1 + 17408 0.66 0.7731
Target:  5'- uGGCCGGGcgcuauGCCGCCG-CAUaCGAg -3'
miRNA:   3'- gCCGGCCUuuag--UGGUGGUaGUA-GCU- -5'
23078 5' -52.6 NC_005178.1 + 34772 0.68 0.639617
Target:  5'- uCGGCgaCGGcaAGAUCACCcugACCGUCGUCc- -3'
miRNA:   3'- -GCCG--GCC--UUUAGUGG---UGGUAGUAGcu -5'
23078 5' -52.6 NC_005178.1 + 28343 0.68 0.673908
Target:  5'- uGGCUGGuugucuucGAUCACCAgCAUUuUCGGc -3'
miRNA:   3'- gCCGGCCu-------UUAGUGGUgGUAGuAGCU- -5'
23078 5' -52.6 NC_005178.1 + 29844 0.67 0.730034
Target:  5'- uGGCUGGG--UCACCgACCGcgccucggCAUCGGa -3'
miRNA:   3'- gCCGGCCUuuAGUGG-UGGUa-------GUAGCU- -5'
23078 5' -52.6 NC_005178.1 + 14240 0.66 0.740992
Target:  5'- gGGCCgcgucuGGcAAGUCGgCACCAUCGUUa- -3'
miRNA:   3'- gCCGG------CC-UUUAGUgGUGGUAGUAGcu -5'
23078 5' -52.6 NC_005178.1 + 20954 0.66 0.751831
Target:  5'- gCGGCaacguccaGGucuUCGCCggcGCCAUCGUCGu -3'
miRNA:   3'- -GCCGg-------CCuuuAGUGG---UGGUAGUAGCu -5'
23078 5' -52.6 NC_005178.1 + 8610 0.66 0.751831
Target:  5'- -cGCCGGAAGUCuCCgGCCAagGUCa- -3'
miRNA:   3'- gcCGGCCUUUAGuGG-UGGUagUAGcu -5'
23078 5' -52.6 NC_005178.1 + 28552 0.66 0.762538
Target:  5'- gGGCCGuccgccgCGCCACCGggggCGUCGc -3'
miRNA:   3'- gCCGGCcuuua--GUGGUGGUa---GUAGCu -5'
23078 5' -52.6 NC_005178.1 + 4898 0.66 0.7731
Target:  5'- cCGGCCGGGAccaucccggaaAUgGCCgACCAgaUCGcCGAg -3'
miRNA:   3'- -GCCGGCCUU-----------UAgUGG-UGGU--AGUaGCU- -5'
23078 5' -52.6 NC_005178.1 + 15425 0.68 0.639617
Target:  5'- uGGuaGGAgacgcaacGAUgGCCGCCAUCGUgGAu -3'
miRNA:   3'- gCCggCCU--------UUAgUGGUGGUAGUAgCU- -5'
23078 5' -52.6 NC_005178.1 + 14991 0.69 0.593841
Target:  5'- -uGCCGGAcaaGAUCAUCGaagaCAUCAUCGc -3'
miRNA:   3'- gcCGGCCU---UUAGUGGUg---GUAGUAGCu -5'
23078 5' -52.6 NC_005178.1 + 17070 0.69 0.593841
Target:  5'- gCGGCCGGAG---GCCGCCAUUg---- -3'
miRNA:   3'- -GCCGGCCUUuagUGGUGGUAGuagcu -5'
23078 5' -52.6 NC_005178.1 + 27141 0.81 0.122408
Target:  5'- gCGGCCGGAAaauAUCGCCGCCGcucgcaaggcCAUCGAu -3'
miRNA:   3'- -GCCGGCCUU---UAGUGGUGGUa---------GUAGCU- -5'
23078 5' -52.6 NC_005178.1 + 32155 0.73 0.383193
Target:  5'- aCGGCaCGGucuAUCACCGCCG-CAUCc- -3'
miRNA:   3'- -GCCG-GCCuu-UAGUGGUGGUaGUAGcu -5'
23078 5' -52.6 NC_005178.1 + 21235 0.73 0.392552
Target:  5'- cCGGCCGGccg-CAUCAUCggCGUCGAa -3'
miRNA:   3'- -GCCGGCCuuuaGUGGUGGuaGUAGCU- -5'
23078 5' -52.6 NC_005178.1 + 31902 0.72 0.411711
Target:  5'- -cGCCGGGAuggCGCUGCCgGUCAUCGGc -3'
miRNA:   3'- gcCGGCCUUua-GUGGUGG-UAGUAGCU- -5'
23078 5' -52.6 NC_005178.1 + 11215 0.72 0.421506
Target:  5'- cCGGCUGu---UCugCACCAUCGUCGc -3'
miRNA:   3'- -GCCGGCcuuuAGugGUGGUAGUAGCu -5'
23078 5' -52.6 NC_005178.1 + 31172 0.7 0.504528
Target:  5'- gCGaGCCGGAccugguccuGGUCAUCACCGgcaAUCGGa -3'
miRNA:   3'- -GC-CGGCCU---------UUAGUGGUGGUag-UAGCU- -5'
23078 5' -52.6 NC_005178.1 + 12794 0.7 0.5264
Target:  5'- cCGGCagucccUGGAGGUCgcgGCCGCCAUguUCGGc -3'
miRNA:   3'- -GCCG------GCCUUUAG---UGGUGGUAguAGCU- -5'
23078 5' -52.6 NC_005178.1 + 32117 0.7 0.548618
Target:  5'- uCGGCCGGGccGUCGCgaCAUCcgUAUCGAg -3'
miRNA:   3'- -GCCGGCCUu-UAGUG--GUGGuaGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.