miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23078 5' -52.6 NC_005178.1 + 1564 0.73 0.392552
Target:  5'- uGGCCGGAAGUCGgCAgCGUUG-CGAc -3'
miRNA:   3'- gCCGGCCUUUAGUgGUgGUAGUaGCU- -5'
23078 5' -52.6 NC_005178.1 + 3390 1.09 0.001182
Target:  5'- cCGGCCGGAAAUCACCACCAUCAUCGAc -3'
miRNA:   3'- -GCCGGCCUUUAGUGGUGGUAGUAGCU- -5'
23078 5' -52.6 NC_005178.1 + 3643 0.67 0.696574
Target:  5'- aGGCCGccGAGcAUCGCCGCCAggcgCGGc -3'
miRNA:   3'- gCCGGC--CUU-UAGUGGUGGUaguaGCU- -5'
23078 5' -52.6 NC_005178.1 + 4898 0.66 0.7731
Target:  5'- cCGGCCGGGAccaucccggaaAUgGCCgACCAgaUCGcCGAg -3'
miRNA:   3'- -GCCGGCCUU-----------UAgUGG-UGGU--AGUaGCU- -5'
23078 5' -52.6 NC_005178.1 + 4996 0.69 0.559839
Target:  5'- uGGUCGGAcugcgGAUCGCCGgagcagauaauuCCGUUGUCGGu -3'
miRNA:   3'- gCCGGCCU-----UUAGUGGU------------GGUAGUAGCU- -5'
23078 5' -52.6 NC_005178.1 + 8610 0.66 0.751831
Target:  5'- -cGCCGGAAGUCuCCgGCCAagGUCa- -3'
miRNA:   3'- gcCGGCCUUUAGuGG-UGGUagUAGcu -5'
23078 5' -52.6 NC_005178.1 + 8844 0.67 0.685268
Target:  5'- cCGGCCcacauGUCgGCCGCCAUCugGUCGGg -3'
miRNA:   3'- -GCCGGccuu-UAG-UGGUGGUAG--UAGCU- -5'
23078 5' -52.6 NC_005178.1 + 11215 0.72 0.421506
Target:  5'- cCGGCUGu---UCugCACCAUCGUCGc -3'
miRNA:   3'- -GCCGGCcuuuAGugGUGGUAGUAGCu -5'
23078 5' -52.6 NC_005178.1 + 12794 0.7 0.5264
Target:  5'- cCGGCagucccUGGAGGUCgcgGCCGCCAUguUCGGc -3'
miRNA:   3'- -GCCG------GCCUUUAG---UGGUGGUAguAGCU- -5'
23078 5' -52.6 NC_005178.1 + 12883 0.67 0.730034
Target:  5'- aCGGUCGGGGAaCAgaacuuCCagGCUGUCAUCGAc -3'
miRNA:   3'- -GCCGGCCUUUaGU------GG--UGGUAGUAGCU- -5'
23078 5' -52.6 NC_005178.1 + 14240 0.66 0.740992
Target:  5'- gGGCCgcgucuGGcAAGUCGgCACCAUCGUUa- -3'
miRNA:   3'- gCCGG------CC-UUUAGUgGUGGUAGUAGcu -5'
23078 5' -52.6 NC_005178.1 + 14991 0.69 0.593841
Target:  5'- -uGCCGGAcaaGAUCAUCGaagaCAUCAUCGc -3'
miRNA:   3'- gcCGGCCU---UUAGUGGUg---GUAGUAGCu -5'
23078 5' -52.6 NC_005178.1 + 15425 0.68 0.639617
Target:  5'- uGGuaGGAgacgcaacGAUgGCCGCCAUCGUgGAu -3'
miRNA:   3'- gCCggCCU--------UUAgUGGUGGUAGUAgCU- -5'
23078 5' -52.6 NC_005178.1 + 16333 0.69 0.615555
Target:  5'- cCGGCCGGGGAgcggguuUCGgUGCCGUCcgUGGc -3'
miRNA:   3'- -GCCGGCCUUU-------AGUgGUGGUAGuaGCU- -5'
23078 5' -52.6 NC_005178.1 + 16957 0.66 0.740992
Target:  5'- aGGCCGuccacUCGCCGCCGUUgaggCGAg -3'
miRNA:   3'- gCCGGCcuuu-AGUGGUGGUAGua--GCU- -5'
23078 5' -52.6 NC_005178.1 + 17070 0.69 0.593841
Target:  5'- gCGGCCGGAG---GCCGCCAUUg---- -3'
miRNA:   3'- -GCCGGCCUUuagUGGUGGUAGuagcu -5'
23078 5' -52.6 NC_005178.1 + 17408 0.66 0.7731
Target:  5'- uGGCCGGGcgcuauGCCGCCG-CAUaCGAg -3'
miRNA:   3'- gCCGGCCUuuag--UGGUGGUaGUA-GCU- -5'
23078 5' -52.6 NC_005178.1 + 17493 0.67 0.685268
Target:  5'- aGGCCGGAGccuUCG-CGCCAU--UCGAa -3'
miRNA:   3'- gCCGGCCUUu--AGUgGUGGUAguAGCU- -5'
23078 5' -52.6 NC_005178.1 + 20954 0.66 0.751831
Target:  5'- gCGGCaacguccaGGucuUCGCCggcGCCAUCGUCGu -3'
miRNA:   3'- -GCCGg-------CCuuuAGUGG---UGGUAGUAGCu -5'
23078 5' -52.6 NC_005178.1 + 21235 0.73 0.392552
Target:  5'- cCGGCCGGccg-CAUCAUCggCGUCGAa -3'
miRNA:   3'- -GCCGGCCuuuaGUGGUGGuaGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.