miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23080 5' -53.8 NC_005178.1 + 32618 0.66 0.713281
Target:  5'- gGCCGCUgGCGGcC---AGUUCcUCGGCg -3'
miRNA:   3'- -CGGCGA-CGCUuGaccUCAAGuAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 9681 0.66 0.713281
Target:  5'- aGuuGCccuggGCGGcCUGGAG---GUCGGCg -3'
miRNA:   3'- -CggCGa----CGCUuGACCUCaagUAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 29643 0.66 0.713281
Target:  5'- aGCCccuuGCUGCGcaguAGCUccaGGAccgCAUCGGCg -3'
miRNA:   3'- -CGG----CGACGC----UUGA---CCUcaaGUAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 22440 0.66 0.713281
Target:  5'- aGCCccaGCUGCGcgucgagucCUGcGAGUUCuugccggacgacGUCGGCg -3'
miRNA:   3'- -CGG---CGACGCuu-------GAC-CUCAAG------------UAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 16190 0.66 0.713281
Target:  5'- cCUGCUGCGAGC-GGuGacCGgccUCGGCc -3'
miRNA:   3'- cGGCGACGCUUGaCCuCaaGU---AGCCG- -5'
23080 5' -53.8 NC_005178.1 + 2850 0.66 0.706614
Target:  5'- uGCCGCgccgggucgaacggaUGCGGaacgGCUGGccagGGUUCAggcuacgggcgCGGCg -3'
miRNA:   3'- -CGGCG---------------ACGCU----UGACC----UCAAGUa----------GCCG- -5'
23080 5' -53.8 NC_005178.1 + 31070 0.66 0.695441
Target:  5'- cGCCGCUGgGuuuugcugccCUGGAGgaacgCAccuggacggucagcaUCGGCa -3'
miRNA:   3'- -CGGCGACgCuu--------GACCUCaa---GU---------------AGCCG- -5'
23080 5' -53.8 NC_005178.1 + 6206 0.66 0.690952
Target:  5'- uCCGCgacaugGCGAGCcGuGGGUUCAgucgUCGGg -3'
miRNA:   3'- cGGCGa-----CGCUUGaC-CUCAAGU----AGCCg -5'
23080 5' -53.8 NC_005178.1 + 35145 0.66 0.690952
Target:  5'- -aCGUUGaCGAacgccagccgGCUGGAGgacgUCAcugUCGGCc -3'
miRNA:   3'- cgGCGAC-GCU----------UGACCUCa---AGU---AGCCG- -5'
23080 5' -53.8 NC_005178.1 + 1927 0.66 0.679691
Target:  5'- uGCCGCUGUaGAcCUGGAGcgUCAcCGucGCc -3'
miRNA:   3'- -CGGCGACG-CUuGACCUCa-AGUaGC--CG- -5'
23080 5' -53.8 NC_005178.1 + 6102 0.67 0.655899
Target:  5'- gGCCGCcaGCGGuuccuggagcaGCUGGAuaUCAggccagaUCGGCa -3'
miRNA:   3'- -CGGCGa-CGCU-----------UGACCUcaAGU-------AGCCG- -5'
23080 5' -53.8 NC_005178.1 + 16128 0.67 0.645664
Target:  5'- aUCGUUGCu-GCUGGuGUUgcUCGGCa -3'
miRNA:   3'- cGGCGACGcuUGACCuCAAguAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 22369 0.67 0.627448
Target:  5'- gGCCGUuggccaugUGCG-GCUGGAGgcuuUCgaugcgcaguagcuuGUCGGCg -3'
miRNA:   3'- -CGGCG--------ACGCuUGACCUCa---AG---------------UAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 20917 0.67 0.622894
Target:  5'- cCCGCUccaGGACgccGAGgUCAUCGGCg -3'
miRNA:   3'- cGGCGAcg-CUUGac-CUCaAGUAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 12151 0.67 0.611516
Target:  5'- cCCGCgccuaccGCGAcgucCUGGAGca-GUCGGCg -3'
miRNA:   3'- cGGCGa------CGCUu---GACCUCaagUAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 5506 0.67 0.610379
Target:  5'- cGCCaGUUGCGAGacggUGGcgaccagGGUcaggUCGUCGGCg -3'
miRNA:   3'- -CGG-CGACGCUUg---ACC-------UCA----AGUAGCCG- -5'
23080 5' -53.8 NC_005178.1 + 24010 0.68 0.604698
Target:  5'- cGCCGCauagGCGAGCUGGAagccgaaauugcucaGUUCAaacGCu -3'
miRNA:   3'- -CGGCGa---CGCUUGACCU---------------CAAGUagcCG- -5'
23080 5' -53.8 NC_005178.1 + 32423 0.68 0.577538
Target:  5'- aGCCGgUGCG-GCUGuaucAGUUCAgccgUGGCg -3'
miRNA:   3'- -CGGCgACGCuUGACc---UCAAGUa---GCCG- -5'
23080 5' -53.8 NC_005178.1 + 26837 0.69 0.537355
Target:  5'- uGCCGCcauccuggcggugagUGCGAcgcgggauuaGCggaaGGGGUUCAaCGGCu -3'
miRNA:   3'- -CGGCG---------------ACGCU----------UGa---CCUCAAGUaGCCG- -5'
23080 5' -53.8 NC_005178.1 + 33192 0.69 0.532947
Target:  5'- cGgCGCUGCGcGACcGGAGUUgcUCGGg -3'
miRNA:   3'- -CgGCGACGC-UUGaCCUCAAguAGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.