miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23083 5' -61.2 NC_005178.1 + 30052 0.66 0.333272
Target:  5'- uGCCGGCGaaGUCGCgguaGCUGAUCGguUCGc -3'
miRNA:   3'- gCGGUCGC--CGGCGgg--CGACUAGU--AGC- -5'
23083 5' -61.2 NC_005178.1 + 23465 0.66 0.333272
Target:  5'- gCGcCCGGCGcgaaGCCgGCCCGCUGcUCGgcCGg -3'
miRNA:   3'- -GC-GGUCGC----CGG-CGGGCGACuAGUa-GC- -5'
23083 5' -61.2 NC_005178.1 + 20478 0.66 0.325354
Target:  5'- cCGCC-GCcaCCGCCCaGCUGAagGUCGc -3'
miRNA:   3'- -GCGGuCGccGGCGGG-CGACUagUAGC- -5'
23083 5' -61.2 NC_005178.1 + 11101 0.66 0.317577
Target:  5'- gGCCGGCaGcGCCGCgCUGCUGAaaauguuuggCAUCc -3'
miRNA:   3'- gCGGUCG-C-CGGCG-GGCGACUa---------GUAGc -5'
23083 5' -61.2 NC_005178.1 + 25884 0.66 0.317577
Target:  5'- gGCCAuGCGGCaguuGCCgGCgcaGAUCAcCGa -3'
miRNA:   3'- gCGGU-CGCCGg---CGGgCGa--CUAGUaGC- -5'
23083 5' -61.2 NC_005178.1 + 21228 0.66 0.295089
Target:  5'- cCGCUcccCGGCCGgCCGC--AUCAUCGg -3'
miRNA:   3'- -GCGGuc-GCCGGCgGGCGacUAGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 9851 0.66 0.295089
Target:  5'- uCGUCAa-GGCUGCCaCGCUGAUCGa-- -3'
miRNA:   3'- -GCGGUcgCCGGCGG-GCGACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 34180 0.67 0.287873
Target:  5'- gGCCGGaagGGCCGgCCGUg---CAUCGg -3'
miRNA:   3'- gCGGUCg--CCGGCgGGCGacuaGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 29196 0.67 0.287873
Target:  5'- uCGCCAaCGGCCGCagGUucuggaUGGUCGUCa -3'
miRNA:   3'- -GCGGUcGCCGGCGggCG------ACUAGUAGc -5'
23083 5' -61.2 NC_005178.1 + 4057 0.67 0.280797
Target:  5'- uGCCGGUGGCaguaGCCCuGUcgagUGGUCcagGUCGg -3'
miRNA:   3'- gCGGUCGCCGg---CGGG-CG----ACUAG---UAGC- -5'
23083 5' -61.2 NC_005178.1 + 8842 0.67 0.280797
Target:  5'- uGCCGGCccacaugucGGCCGCCauCUGGUCGg-- -3'
miRNA:   3'- gCGGUCG---------CCGGCGGgcGACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 8311 0.67 0.260399
Target:  5'- aGCCGGCgccGGCCGaCUCGUaGAUCGUg- -3'
miRNA:   3'- gCGGUCG---CCGGC-GGGCGaCUAGUAgc -5'
23083 5' -61.2 NC_005178.1 + 14022 0.67 0.260399
Target:  5'- gGCCAGCGGagugaCGCCC--UGAUCAg-- -3'
miRNA:   3'- gCGGUCGCCg----GCGGGcgACUAGUagc -5'
23083 5' -61.2 NC_005178.1 + 14144 0.68 0.247482
Target:  5'- aCGUCAGCacGGCUGCCCaguGCUGGgugacCGUCu -3'
miRNA:   3'- -GCGGUCG--CCGGCGGG---CGACUa----GUAGc -5'
23083 5' -61.2 NC_005178.1 + 24441 0.68 0.241224
Target:  5'- gGCCGaaGGCgGCgCGCcGGUCAUCGu -3'
miRNA:   3'- gCGGUcgCCGgCGgGCGaCUAGUAGC- -5'
23083 5' -61.2 NC_005178.1 + 20206 0.68 0.235099
Target:  5'- aGCCGGCgcgGGCUGCCgaGCUGggCGaccUCGg -3'
miRNA:   3'- gCGGUCG---CCGGCGGg-CGACuaGU---AGC- -5'
23083 5' -61.2 NC_005178.1 + 12688 0.68 0.223242
Target:  5'- uGCCuGCGGCCuGCUCGCggcGcgUAUCa -3'
miRNA:   3'- gCGGuCGCCGG-CGGGCGa--CuaGUAGc -5'
23083 5' -61.2 NC_005178.1 + 1214 0.68 0.223242
Target:  5'- uGCCGGCGaaUCGUCCGCUGucgggCAUCa -3'
miRNA:   3'- gCGGUCGCc-GGCGGGCGACua---GUAGc -5'
23083 5' -61.2 NC_005178.1 + 32611 0.68 0.218074
Target:  5'- aGCgGGCGGCCGCUgGCggccaguuccucggcGAUCugGUCGg -3'
miRNA:   3'- gCGgUCGCCGGCGGgCGa--------------CUAG--UAGC- -5'
23083 5' -61.2 NC_005178.1 + 10953 0.68 0.216939
Target:  5'- gGCCAGUugGGCgGCCCcagcgaaucccuuGCUGAUCGagGg -3'
miRNA:   3'- gCGGUCG--CCGgCGGG-------------CGACUAGUagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.