Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23083 | 5' | -61.2 | NC_005178.1 | + | 23465 | 0.66 | 0.333272 |
Target: 5'- gCGcCCGGCGcgaaGCCgGCCCGCUGcUCGgcCGg -3' miRNA: 3'- -GC-GGUCGC----CGG-CGGGCGACuAGUa-GC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 30052 | 0.66 | 0.333272 |
Target: 5'- uGCCGGCGaaGUCGCgguaGCUGAUCGguUCGc -3' miRNA: 3'- gCGGUCGC--CGGCGgg--CGACUAGU--AGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 20478 | 0.66 | 0.325354 |
Target: 5'- cCGCC-GCcaCCGCCCaGCUGAagGUCGc -3' miRNA: 3'- -GCGGuCGccGGCGGG-CGACUagUAGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 11101 | 0.66 | 0.317577 |
Target: 5'- gGCCGGCaGcGCCGCgCUGCUGAaaauguuuggCAUCc -3' miRNA: 3'- gCGGUCG-C-CGGCG-GGCGACUa---------GUAGc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 25884 | 0.66 | 0.317577 |
Target: 5'- gGCCAuGCGGCaguuGCCgGCgcaGAUCAcCGa -3' miRNA: 3'- gCGGU-CGCCGg---CGGgCGa--CUAGUaGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 21228 | 0.66 | 0.295089 |
Target: 5'- cCGCUcccCGGCCGgCCGC--AUCAUCGg -3' miRNA: 3'- -GCGGuc-GCCGGCgGGCGacUAGUAGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 9851 | 0.66 | 0.295089 |
Target: 5'- uCGUCAa-GGCUGCCaCGCUGAUCGa-- -3' miRNA: 3'- -GCGGUcgCCGGCGG-GCGACUAGUagc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 29196 | 0.67 | 0.287873 |
Target: 5'- uCGCCAaCGGCCGCagGUucuggaUGGUCGUCa -3' miRNA: 3'- -GCGGUcGCCGGCGggCG------ACUAGUAGc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 34180 | 0.67 | 0.287873 |
Target: 5'- gGCCGGaagGGCCGgCCGUg---CAUCGg -3' miRNA: 3'- gCGGUCg--CCGGCgGGCGacuaGUAGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 8842 | 0.67 | 0.280797 |
Target: 5'- uGCCGGCccacaugucGGCCGCCauCUGGUCGg-- -3' miRNA: 3'- gCGGUCG---------CCGGCGGgcGACUAGUagc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 4057 | 0.67 | 0.280797 |
Target: 5'- uGCCGGUGGCaguaGCCCuGUcgagUGGUCcagGUCGg -3' miRNA: 3'- gCGGUCGCCGg---CGGG-CG----ACUAG---UAGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 14022 | 0.67 | 0.260399 |
Target: 5'- gGCCAGCGGagugaCGCCC--UGAUCAg-- -3' miRNA: 3'- gCGGUCGCCg----GCGGGcgACUAGUagc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 8311 | 0.67 | 0.260399 |
Target: 5'- aGCCGGCgccGGCCGaCUCGUaGAUCGUg- -3' miRNA: 3'- gCGGUCG---CCGGC-GGGCGaCUAGUAgc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 14144 | 0.68 | 0.247482 |
Target: 5'- aCGUCAGCacGGCUGCCCaguGCUGGgugacCGUCu -3' miRNA: 3'- -GCGGUCG--CCGGCGGG---CGACUa----GUAGc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 24441 | 0.68 | 0.241224 |
Target: 5'- gGCCGaaGGCgGCgCGCcGGUCAUCGu -3' miRNA: 3'- gCGGUcgCCGgCGgGCGaCUAGUAGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 20206 | 0.68 | 0.235099 |
Target: 5'- aGCCGGCgcgGGCUGCCgaGCUGggCGaccUCGg -3' miRNA: 3'- gCGGUCG---CCGGCGGg-CGACuaGU---AGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 12688 | 0.68 | 0.223242 |
Target: 5'- uGCCuGCGGCCuGCUCGCggcGcgUAUCa -3' miRNA: 3'- gCGGuCGCCGG-CGGGCGa--CuaGUAGc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 1214 | 0.68 | 0.223242 |
Target: 5'- uGCCGGCGaaUCGUCCGCUGucgggCAUCa -3' miRNA: 3'- gCGGUCGCc-GGCGGGCGACua---GUAGc -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 32611 | 0.68 | 0.218074 |
Target: 5'- aGCgGGCGGCCGCUgGCggccaguuccucggcGAUCugGUCGg -3' miRNA: 3'- gCGgUCGCCGGCGGgCGa--------------CUAG--UAGC- -5' |
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23083 | 5' | -61.2 | NC_005178.1 | + | 10953 | 0.68 | 0.216939 |
Target: 5'- gGCCAGUugGGCgGCCCcagcgaaucccuuGCUGAUCGagGg -3' miRNA: 3'- gCGGUCG--CCGgCGGG-------------CGACUAGUagC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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