Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23087 | 5' | -54.3 | NC_005178.1 | + | 9092 | 0.72 | 0.335932 |
Target: 5'- uGCAUGGCGGAugccgACCGGaUUACGACCu -3' miRNA: 3'- gCGUGCCGCUUca---UGGUC-GGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 27452 | 0.72 | 0.335932 |
Target: 5'- -cCACGGCGGcccAGcgcAUCAGCCugGACCa -3' miRNA: 3'- gcGUGCCGCU---UCa--UGGUCGGugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 36886 | 0.72 | 0.339298 |
Target: 5'- cCGUACuucuacaugacucuaGGCGggGUugCGGCUAUGGCUg -3' miRNA: 3'- -GCGUG---------------CCGCuuCAugGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 35259 | 0.72 | 0.344393 |
Target: 5'- gCGCGCGGCugcgccGAuaccGUACCGGCCaaGCAucugGCCg -3' miRNA: 3'- -GCGUGCCG------CUu---CAUGGUCGG--UGU----UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 17329 | 0.72 | 0.353006 |
Target: 5'- gGCGgGGcCGAGGUcgcCCAGCUcgGCAGCCc -3' miRNA: 3'- gCGUgCC-GCUUCAu--GGUCGG--UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 27239 | 0.72 | 0.353006 |
Target: 5'- gCGuCACcgaGGCGAAGaACC-GCCugGACCa -3' miRNA: 3'- -GC-GUG---CCGCUUCaUGGuCGGugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 20859 | 0.72 | 0.353006 |
Target: 5'- aGUugGGCGAugccuGcGCCGGCCugAucGCCc -3' miRNA: 3'- gCGugCCGCUu----CaUGGUCGGugU--UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 5587 | 0.71 | 0.358247 |
Target: 5'- aGCGCGGCGAAGaggucguuuuccaACUGGuCCGCGACa -3' miRNA: 3'- gCGUGCCGCUUCa------------UGGUC-GGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 19471 | 0.71 | 0.379748 |
Target: 5'- gCGCuGCGGC-AGGUucGCCAGCUgcucgcgaGCGACCg -3' miRNA: 3'- -GCG-UGCCGcUUCA--UGGUCGG--------UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 19166 | 0.71 | 0.379748 |
Target: 5'- gCGCaucaGCGGCaGGGUGUCGGUUACAGCCg -3' miRNA: 3'- -GCG----UGCCGcUUCAUGGUCGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 33921 | 0.71 | 0.388031 |
Target: 5'- uGCuCGGCGGccGGUGCCGGCUuuccgggGCGuuACCa -3' miRNA: 3'- gCGuGCCGCU--UCAUGGUCGG-------UGU--UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 17861 | 0.71 | 0.388959 |
Target: 5'- cCGCccuCGGCGAGGU-CCAGgacgugcuCCugGACCc -3' miRNA: 3'- -GCGu--GCCGCUUCAuGGUC--------GGugUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 4093 | 0.71 | 0.398315 |
Target: 5'- gGCACGGUGugcAGGUGCUgAGCCguaACGAUCa -3' miRNA: 3'- gCGUGCCGC---UUCAUGG-UCGG---UGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 19949 | 0.7 | 0.407814 |
Target: 5'- -cCACGGCGAc--GCCAGCgGCcGCCg -3' miRNA: 3'- gcGUGCCGCUucaUGGUCGgUGuUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 1078 | 0.7 | 0.417453 |
Target: 5'- gCGCugGGagugGAucaAGUACCAGCUGCGcauCCg -3' miRNA: 3'- -GCGugCCg---CU---UCAUGGUCGGUGUu--GG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 24290 | 0.7 | 0.426246 |
Target: 5'- gCGCcuACGGCGAgguccaacugcugGGUcugccgacGCCGGCCcCGACCc -3' miRNA: 3'- -GCG--UGCCGCU-------------UCA--------UGGUCGGuGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 25343 | 0.7 | 0.42723 |
Target: 5'- cCGC-UGGCGAccaUGCCAGCCAgGcugGCCg -3' miRNA: 3'- -GCGuGCCGCUuc-AUGGUCGGUgU---UGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 16555 | 0.7 | 0.437142 |
Target: 5'- cCGCccACGGCGAacccGGUAgCGuucGCCACGACg -3' miRNA: 3'- -GCG--UGCCGCU----UCAUgGU---CGGUGUUGg -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 11714 | 0.69 | 0.454289 |
Target: 5'- uCGCugGGCGccGUccaacgagaacgacACCcgcgcauauGCCACGGCCg -3' miRNA: 3'- -GCGugCCGCuuCA--------------UGGu--------CGGUGUUGG- -5' |
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23087 | 5' | -54.3 | NC_005178.1 | + | 25580 | 0.69 | 0.457353 |
Target: 5'- aGCGCGcccGCGAacagcaGGUugCAGCCgagcaacgaGCGGCCg -3' miRNA: 3'- gCGUGC---CGCU------UCAugGUCGG---------UGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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