miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23093 3' -54.8 NC_005178.1 + 36041 0.7 0.39182
Target:  5'- gGGCC-GGGGCGAACCaGAaCcGCUugGCCc -3'
miRNA:   3'- -CCGGaCCUCGCUUGG-CUaGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 28990 0.7 0.401173
Target:  5'- uGGCCUGG-GCGGcACCGAUagCAuCUACa -3'
miRNA:   3'- -CCGGACCuCGCU-UGGCUA--GUcGAUGg -5'
23093 3' -54.8 NC_005178.1 + 1938 0.7 0.410667
Target:  5'- -aCCUGGAGCGucACCGucgcccCAGCUuCCg -3'
miRNA:   3'- ccGGACCUCGCu-UGGCua----GUCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 26148 0.7 0.420299
Target:  5'- aGGCgCaGGGcCGcACCGAUCAGCcACCa -3'
miRNA:   3'- -CCG-GaCCUcGCuUGGCUAGUCGaUGG- -5'
23093 3' -54.8 NC_005178.1 + 10458 0.7 0.430066
Target:  5'- cGCCUGGAucGCGGcaaugcuCCGGUCcAGCUcCCu -3'
miRNA:   3'- cCGGACCU--CGCUu------GGCUAG-UCGAuGG- -5'
23093 3' -54.8 NC_005178.1 + 20230 0.7 0.430066
Target:  5'- cGGUCUGGAGCcucucgcacGCCGAgCGGCcgcgACCu -3'
miRNA:   3'- -CCGGACCUCGcu-------UGGCUaGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 9693 0.69 0.439966
Target:  5'- cGGCCUGGAggucgGCGuAGuuGcguugCAGCUGCUg -3'
miRNA:   3'- -CCGGACCU-----CGC-UUggCua---GUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 12086 0.69 0.457088
Target:  5'- cGCCUGGuggaguggucgcguGGCGGgccugGCCGAUgGGCgcGCCg -3'
miRNA:   3'- cCGGACC--------------UCGCU-----UGGCUAgUCGa-UGG- -5'
23093 3' -54.8 NC_005178.1 + 15958 0.69 0.460147
Target:  5'- cGCCUGGGGCGGuagauGCCGAUuUGGUcguCCu -3'
miRNA:   3'- cCGGACCUCGCU-----UGGCUA-GUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 31940 0.69 0.460147
Target:  5'- cGGCaUGGGcCGAGCCGAgcggUCGGCguuCCg -3'
miRNA:   3'- -CCGgACCUcGCUUGGCU----AGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 26072 0.69 0.460147
Target:  5'- cGGCCUGGA-CGAcaucgcCCGAggggCGgacGCUGCCg -3'
miRNA:   3'- -CCGGACCUcGCUu-----GGCUa---GU---CGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 7340 0.68 0.491307
Target:  5'- cGCCUGGAGCcGACaGAggGGCgcgugACCa -3'
miRNA:   3'- cCGGACCUCGcUUGgCUagUCGa----UGG- -5'
23093 3' -54.8 NC_005178.1 + 10263 0.68 0.50191
Target:  5'- cGCCUGGAGCuu-CUGcUCGGCguuCCu -3'
miRNA:   3'- cCGGACCUCGcuuGGCuAGUCGau-GG- -5'
23093 3' -54.8 NC_005178.1 + 2920 0.68 0.50191
Target:  5'- cGGCCaGGu-CGAGCCG--CAGCUGCUc -3'
miRNA:   3'- -CCGGaCCucGCUUGGCuaGUCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 25194 0.68 0.50191
Target:  5'- uGGCCUGG-GCGGcacguugacgGgCGGUUucgAGCUGCUg -3'
miRNA:   3'- -CCGGACCuCGCU----------UgGCUAG---UCGAUGG- -5'
23093 3' -54.8 NC_005178.1 + 31710 0.68 0.509392
Target:  5'- cGGCCUGGcuugagggcguaauGGCGGccguuGCgGGUCAGgUAUCc -3'
miRNA:   3'- -CCGGACC--------------UCGCU-----UGgCUAGUCgAUGG- -5'
23093 3' -54.8 NC_005178.1 + 24170 0.68 0.523408
Target:  5'- -aCCUGGuggcuGGCGAugUGAUCcGCUugGCCa -3'
miRNA:   3'- ccGGACC-----UCGCUugGCUAGuCGA--UGG- -5'
23093 3' -54.8 NC_005178.1 + 16334 0.68 0.523408
Target:  5'- cGGCCggGGAGCGggUU--UCGG-UGCCg -3'
miRNA:   3'- -CCGGa-CCUCGCuuGGcuAGUCgAUGG- -5'
23093 3' -54.8 NC_005178.1 + 28432 0.68 0.531017
Target:  5'- cGGCCUGGcuauccaacaaugaGGuCGuaauCCGGUCGGCauccGCCa -3'
miRNA:   3'- -CCGGACC--------------UC-GCuu--GGCUAGUCGa---UGG- -5'
23093 3' -54.8 NC_005178.1 + 37187 0.68 0.533198
Target:  5'- cGCCUGGAGgcCGAguuugacGCC-AUC-GCUACCg -3'
miRNA:   3'- cCGGACCUC--GCU-------UGGcUAGuCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.