Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 15786 | 0.66 | 0.565197 |
Target: 5'- -gGCUGGCgUUGGaaagcGGAGCGGUGCc -3' miRNA: 3'- aaCGGCCGaAGCUgga--CCUCGUUACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 2164 | 0.66 | 0.565197 |
Target: 5'- --cUCGGCcugaUCGACgUGGAuugcaGCAGUGCg -3' miRNA: 3'- aacGGCCGa---AGCUGgACCU-----CGUUACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 30805 | 0.66 | 0.553921 |
Target: 5'- -cG-CGGCcUCGACCUGG-GCcg-GCg -3' miRNA: 3'- aaCgGCCGaAGCUGGACCuCGuuaCG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 12155 | 0.66 | 0.542713 |
Target: 5'- -cGCCuaccGCgaCGuCCUGGAGCAGUcgGCg -3' miRNA: 3'- aaCGGc---CGaaGCuGGACCUCGUUA--CG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 8987 | 0.66 | 0.531581 |
Target: 5'- aUGCCGGCgaCGcCCccGGuGGCGcgGCg -3' miRNA: 3'- aACGGCCGaaGCuGGa-CC-UCGUuaCG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 34775 | 0.66 | 0.531581 |
Target: 5'- -gGuuGGUUUCGACCaGGGcCAGcUGCg -3' miRNA: 3'- aaCggCCGAAGCUGGaCCUcGUU-ACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 33097 | 0.66 | 0.531581 |
Target: 5'- -gGUCGGCagggugaaGACCUGG-GCGGUGg -3' miRNA: 3'- aaCGGCCGaag-----CUGGACCuCGUUACg -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 1439 | 0.66 | 0.531581 |
Target: 5'- -aGCCGGCccgCGcuauACCUGGuG-AGUGCa -3' miRNA: 3'- aaCGGCCGaa-GC----UGGACCuCgUUACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 22657 | 0.66 | 0.520533 |
Target: 5'- -cGCUGGggUCGcGgCUGGAGCcuUGCu -3' miRNA: 3'- aaCGGCCgaAGC-UgGACCUCGuuACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 33934 | 0.67 | 0.476258 |
Target: 5'- gUGCCGGCUUU--CC-GGGGCGuuaccacGUGCu -3' miRNA: 3'- aACGGCCGAAGcuGGaCCUCGU-------UACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 11714 | 0.67 | 0.474145 |
Target: 5'- aUGCCGGCcaCGGCCaUGGcgucagacgugccgAGCAG-GCg -3' miRNA: 3'- aACGGCCGaaGCUGG-ACC--------------UCGUUaCG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 29078 | 0.67 | 0.45638 |
Target: 5'- -gGCaCGGCgUUCaauCCUGGAGCAAUcccGCc -3' miRNA: 3'- aaCG-GCCG-AAGcu-GGACCUCGUUA---CG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 6859 | 0.67 | 0.45638 |
Target: 5'- -gGaCCGcGCaaucgaucugUCGGCCUGGGGCGA-GCg -3' miRNA: 3'- aaC-GGC-CGa---------AGCUGGACCUCGUUaCG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 14090 | 0.68 | 0.425932 |
Target: 5'- -gGCCGGCUUCGcGCCgGGcGCccugGCc -3' miRNA: 3'- aaCGGCCGAAGC-UGGaCCuCGuua-CG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 2995 | 0.68 | 0.425932 |
Target: 5'- cUGCCGaGCgugCGcaGCCUGGAGCGc--- -3' miRNA: 3'- aACGGC-CGaa-GC--UGGACCUCGUuacg -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 15946 | 0.68 | 0.425932 |
Target: 5'- --aCCGGCcaucUUCG-CCUGGGGCGguagAUGCc -3' miRNA: 3'- aacGGCCG----AAGCuGGACCUCGU----UACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 12669 | 0.68 | 0.416054 |
Target: 5'- -cGCUGGCgggUGGCCUGGuugccuGCGGccUGCu -3' miRNA: 3'- aaCGGCCGaa-GCUGGACCu-----CGUU--ACG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 14357 | 0.68 | 0.416054 |
Target: 5'- -gGUCGGCgaCGACCUGGAGa----- -3' miRNA: 3'- aaCGGCCGaaGCUGGACCUCguuacg -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 14764 | 0.68 | 0.416054 |
Target: 5'- -cGCCGuacuGCUcgaccaggUCGGCCUGGGuGCAAUaGCu -3' miRNA: 3'- aaCGGC----CGA--------AGCUGGACCU-CGUUA-CG- -5' |
|||||||
23097 | 5' | -55.6 | NC_005178.1 | + | 25185 | 0.68 | 0.406317 |
Target: 5'- -cGCCGGUagUGGCCUGG-GCg--GCa -3' miRNA: 3'- aaCGGCCGaaGCUGGACCuCGuuaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home