miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 11627 1.14 0.000151
Target:  5'- cGCGCAUAACGGCAUCCGCGCCCUGGCa -3'
miRNA:   3'- -CGCGUAUUGCCGUAGGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 16040 0.85 0.023466
Target:  5'- gGCGCGUAGCgGGCuguUCCGCGUgCUGGCc -3'
miRNA:   3'- -CGCGUAUUG-CCGu--AGGCGCGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 27210 0.78 0.072297
Target:  5'- aGCGCAgccCGGCGcgcuucgccccUCCGCGCCC-GGCc -3'
miRNA:   3'- -CGCGUauuGCCGU-----------AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 34565 0.78 0.072297
Target:  5'- uGCGCAcgcuCGGCAggccaUCCGCGCUCgGGCg -3'
miRNA:   3'- -CGCGUauu-GCCGU-----AGGCGCGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 15491 0.77 0.096594
Target:  5'- uGCGCA-AGCaGCAgaCCGCGCaCCUGGCc -3'
miRNA:   3'- -CGCGUaUUGcCGUa-GGCGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11113 0.77 0.099126
Target:  5'- cGCGCugcUGAaaauguuUGGCAUCCacaucagcgcggGCGCCCUGGCc -3'
miRNA:   3'- -CGCGu--AUU-------GCCGUAGG------------CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 2310 0.77 0.099411
Target:  5'- cGCGCGcGAgGGUGaCCGUGCCgCUGGCg -3'
miRNA:   3'- -CGCGUaUUgCCGUaGGCGCGG-GACCG- -5'
23102 3' -57.5 NC_005178.1 + 17084 0.77 0.10056
Target:  5'- gGCG-GUGGCGGCggcgaucugcucgacGUCCGCGUCCUGGg -3'
miRNA:   3'- -CGCgUAUUGCCG---------------UAGGCGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 22883 0.76 0.111472
Target:  5'- cGCGCcguccuccAUGGCGGCGg-CGCGCuCCUGGUa -3'
miRNA:   3'- -CGCG--------UAUUGCCGUagGCGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 28167 0.75 0.124892
Target:  5'- gGCGCcu--CGGCuguAUCCgccucggccgGCGCCCUGGCg -3'
miRNA:   3'- -CGCGuauuGCCG---UAGG----------CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 4233 0.74 0.139405
Target:  5'- cGCGCAga--GGCccgcgagAagCGCGCCCUGGCu -3'
miRNA:   3'- -CGCGUauugCCG-------UagGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30829 0.74 0.14377
Target:  5'- gGCGCAUGGCGGCA-CC---UCCUGGCu -3'
miRNA:   3'- -CGCGUAUUGCCGUaGGcgcGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 34643 0.74 0.160268
Target:  5'- aGCGCuAUAAgGGCGUguucgaccgCCGCGCCCguagccugaacccUGGCc -3'
miRNA:   3'- -CGCG-UAUUgCCGUA---------GGCGCGGG-------------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 17319 0.74 0.160713
Target:  5'- uGCGCcgGACGGCGgggCCGagguCGCCCagcucGGCa -3'
miRNA:   3'- -CGCGuaUUGCCGUa--GGC----GCGGGa----CCG- -5'
23102 3' -57.5 NC_005178.1 + 17636 0.73 0.184409
Target:  5'- gGCgGCAcUGGCGGCAucgaUCCGCcaGCCC-GGCa -3'
miRNA:   3'- -CG-CGU-AUUGCCGU----AGGCG--CGGGaCCG- -5'
23102 3' -57.5 NC_005178.1 + 16892 0.73 0.189504
Target:  5'- -gGCcgAGCuGC-UCgGCGCCCUGGCc -3'
miRNA:   3'- cgCGuaUUGcCGuAGgCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 20013 0.72 0.205538
Target:  5'- -aGCAgAACGGCcagcCCGCGCCCgcugccGGCc -3'
miRNA:   3'- cgCGUaUUGCCGua--GGCGCGGGa-----CCG- -5'
23102 3' -57.5 NC_005178.1 + 21110 0.72 0.222733
Target:  5'- -aGCGUGGCGGCGagcuggcgggcaUCCGCaGCCaguaggucaUGGCg -3'
miRNA:   3'- cgCGUAUUGCCGU------------AGGCG-CGGg--------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 23229 0.72 0.222733
Target:  5'- -gGUcgAGC-GCAUCCGCGCCgaGGUg -3'
miRNA:   3'- cgCGuaUUGcCGUAGGCGCGGgaCCG- -5'
23102 3' -57.5 NC_005178.1 + 20140 0.71 0.234865
Target:  5'- uCGUAUGcgGCGGCAUa-GCGCCC-GGCc -3'
miRNA:   3'- cGCGUAU--UGCCGUAggCGCGGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.