miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 521 0.67 0.415609
Target:  5'- gGCGCcgu-CGGUccaggaaCCGUGCCCUGcGCu -3'
miRNA:   3'- -CGCGuauuGCCGua-----GGCGCGGGAC-CG- -5'
23102 3' -57.5 NC_005178.1 + 1435 0.66 0.454665
Target:  5'- cCGCAgc-CGGC--CCGCGCuauaCCUGGUg -3'
miRNA:   3'- cGCGUauuGCCGuaGGCGCG----GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 1831 0.68 0.387702
Target:  5'- gGCGCAcguccuggAGCGGacCAUCCGCcauGUCCUcGGCc -3'
miRNA:   3'- -CGCGUa-------UUGCC--GUAGGCG---CGGGA-CCG- -5'
23102 3' -57.5 NC_005178.1 + 1982 0.68 0.352462
Target:  5'- gGCGCGggaaccgcuGCaGCAgaggUCGCGgCCUGGCu -3'
miRNA:   3'- -CGCGUau-------UGcCGUa---GGCGCgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 2189 0.66 0.464737
Target:  5'- aGCaGCcgGGCcuggaGCGUCa-CGCCCUGGCu -3'
miRNA:   3'- -CG-CGuaUUGc----CGUAGgcGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 2310 0.77 0.099411
Target:  5'- cGCGCGcGAgGGUGaCCGUGCCgCUGGCg -3'
miRNA:   3'- -CGCGUaUUgCCGUaGGCGCGG-GACCG- -5'
23102 3' -57.5 NC_005178.1 + 3017 0.67 0.425181
Target:  5'- aGCGCuuccugGACcaGGCcgagcgUgGCGCCCUGGUg -3'
miRNA:   3'- -CGCGua----UUG--CCGua----GgCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 3898 0.66 0.454665
Target:  5'- uGUGCcuucgguuUAGCGccCAUCCGCGaucuCCUGGCg -3'
miRNA:   3'- -CGCGu-------AUUGCc-GUAGGCGCg---GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 4233 0.74 0.139405
Target:  5'- cGCGCAga--GGCccgcgagAagCGCGCCCUGGCu -3'
miRNA:   3'- -CGCGUauugCCG-------UagGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 4288 0.7 0.267626
Target:  5'- -aGCGUGACGGCGgguaUGCCCUGGa -3'
miRNA:   3'- cgCGUAUUGCCGUaggcGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 4636 0.67 0.444713
Target:  5'- -gGCAUAGcCGGCGaCCaCGCCgCUGGa -3'
miRNA:   3'- cgCGUAUU-GCCGUaGGcGCGG-GACCg -5'
23102 3' -57.5 NC_005178.1 + 7029 0.66 0.454665
Target:  5'- cCGCGU--CGaGCGU-CGUGUCCUGGCc -3'
miRNA:   3'- cGCGUAuuGC-CGUAgGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 7509 0.67 0.415609
Target:  5'- aGCGCGUGAauggccCGGCGcugagCUGCGCUaUGGUu -3'
miRNA:   3'- -CGCGUAUU------GCCGUa----GGCGCGGgACCG- -5'
23102 3' -57.5 NC_005178.1 + 7747 0.67 0.424218
Target:  5'- aGCGCcUGGCGGUccuccagggcggaGUCCa-GUCCUGGUg -3'
miRNA:   3'- -CGCGuAUUGCCG-------------UAGGcgCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 10031 0.67 0.40617
Target:  5'- uGCGCAaAAU--CA-CCGCGCuCCUGGCc -3'
miRNA:   3'- -CGCGUaUUGccGUaGGCGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11113 0.77 0.099126
Target:  5'- cGCGCugcUGAaaauguuUGGCAUCCacaucagcgcggGCGCCCUGGCc -3'
miRNA:   3'- -CGCGu--AUU-------GCCGUAGG------------CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11208 0.66 0.510354
Target:  5'- cCGCc--ACGGCcucauacugagugCCGUucGCCCUGGCg -3'
miRNA:   3'- cGCGuauUGCCGua-----------GGCG--CGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11460 0.71 0.254097
Target:  5'- aCGCu--GCGGCAgcgUCCGC-CCCUcgGGCg -3'
miRNA:   3'- cGCGuauUGCCGU---AGGCGcGGGA--CCG- -5'
23102 3' -57.5 NC_005178.1 + 11627 1.14 0.000151
Target:  5'- cGCGCAUAACGGCAUCCGCGCCCUGGCa -3'
miRNA:   3'- -CGCGUAUUGCCGUAGGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11669 0.66 0.464737
Target:  5'- uGCGC----CGGCAacugCCGCauGgCCUGGCg -3'
miRNA:   3'- -CGCGuauuGCCGUa---GGCG--CgGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.